Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 7.6e-62 240.4 123 100.0
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 6.2e-56 220.7 123 93.5
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 6.4e-53 210.7 128 86.7
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 8.4e-53 210.3 123 88.6
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.4e-52 208.8 123 87.8
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 6.0e-51 204.1 127 83.5
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.0e-51 204.1 128 84.4
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.0e-50 203.4 132 82.6
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.0e-50 203.4 128 82.8
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.3e-50 203.0 128 81.2
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.3e-50 203.0 128 81.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 2.3e-50 202.2 127 82.7
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.3e-50 202.2 123 84.6
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.0e-50 201.8 130 83.1
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.9e-50 201.4 128 82.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 3.9e-50 201.4 128 81.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.1e-50 201.1 129 82.2
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 6.6e-50 200.7 128 81.2
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.9e-49 199.1 123 87.0
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.9e-49 199.1 128 82.0
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.1e-47 193.4 124 81.5
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.1e-47 193.4 129 79.8
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.4e-47 193.0 131 78.6
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.4e-47 192.2 128 79.7
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 3.1e-47 191.8 128 78.9
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.1e-47 191.8 128 78.9
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 6.9e-47 190.7 128 77.3
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.5e-46 188.0 128 78.1
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 7.6e-46 187.2 127 78.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 7.6e-46 187.2 123 77.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.6e-46 187.2 123 79.7
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 7.6e-46 187.2 127 78.0
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.3e-45 186.4 128 74.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.3e-45 186.4 127 77.2
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.3e-45 186.4 123 77.2
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.7e-45 186.0 129 78.3
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.8e-45 184.9 127 77.2
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.9e-45 184.5 131 78.6
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 4.9e-45 184.5 128 77.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 4.9e-45 184.5 128 79.7
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 4.9e-45 184.5 128 77.3
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 6.4e-45 184.1 121 77.7
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 6.4e-45 184.1 121 77.7
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 8.4e-45 183.7 131 77.9
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 8.4e-45 183.7 130 76.9
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-44 183.3 123 78.0
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-44 183.3 123 78.0
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-44 183.3 123 78.0
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.1e-44 183.3 130 73.8
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.4e-44 183.0 131 74.8
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.9e-44 182.6 126 77.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.4e-44 182.2 131 74.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.4e-44 182.2 125 77.6
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.2e-44 181.8 125 76.0
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 3.2e-44 181.8 121 80.2
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 3.2e-44 181.8 124 77.4
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.2e-44 181.4 131 74.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.4e-44 181.0 121 79.3
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 5.4e-44 181.0 131 75.6
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.4e-44 181.0 123 78.9
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 5.4e-44 181.0 127 78.0
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 5.4e-44 181.0 129 76.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 9.3e-44 180.3 129 77.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 9.3e-44 180.3 129 77.5
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.2e-43 179.9 125 79.2
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.6e-43 179.5 125 77.6
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.6e-43 179.5 125 77.6
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.6e-43 179.5 127 76.4
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.6e-43 179.5 124 73.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.6e-43 179.5 122 77.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.1e-43 179.1 129 76.0
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 4.6e-43 177.9 126 79.4
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 4.6e-43 177.9 134 73.1
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 6.0e-43 177.6 127 74.8
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 6.0e-43 177.6 126 76.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.9e-43 177.2 123 74.8
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 7.9e-43 177.2 127 75.6
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.0e-42 176.8 130 72.3
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.0e-42 176.8 104 86.5
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.3e-42 175.6 129 72.1
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.0e-42 175.3 123 74.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.0e-42 175.3 128 74.2
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.0e-42 175.3 122 75.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.0e-42 175.3 122 75.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.0e-42 175.3 127 78.0
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 8.7e-42 173.7 129 75.2
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.1e-41 173.3 125 76.8
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.1e-41 173.3 125 76.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.1e-41 173.3 127 74.0
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.3e-41 171.4 123 72.4
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.6e-41 171.0 135 73.3
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.6e-41 171.0 124 74.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 9.6e-41 170.2 132 74.2
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 120 76.7
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.3e-40 169.9 120 77.5
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.6e-40 169.5 132 73.5
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.1e-40 169.1 96 86.5
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.8e-40 168.7 133 72.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.8e-40 168.7 133 72.2
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 3.7e-40 168.3 124 74.2
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 4.8e-40 167.9 132 71.2
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 4.8e-40 167.9 132 72.0
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 4.8e-40 167.9 133 72.2
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 4.8e-40 167.9 133 72.2
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 4.8e-40 167.9 126 73.0
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 8.1e-40 167.2 129 72.9
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 8.1e-40 167.2 124 71.8
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.4e-39 166.4 96 87.5
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.4e-39 165.6 125 72.8
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 5.3e-39 164.5 103 82.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 9.0e-39 163.7 125 72.0
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 9.0e-39 163.7 125 71.2
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.2e-38 163.3 122 69.7
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.5e-38 162.9 135 68.9
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.0e-38 162.5 124 66.9
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.6e-38 162.2 119 72.3
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.6e-38 162.2 123 71.5
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.4e-38 161.8 123 71.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 4.5e-38 161.4 125 70.4
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.7e-37 159.5 125 70.4
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 3.8e-37 158.3 132 68.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 3.8e-37 158.3 132 68.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 3.8e-37 158.3 132 68.9
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 4.9e-37 157.9 123 69.9
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 4.9e-37 157.9 125 68.8
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 7.1e-36 154.1 121 68.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 6.0e-35 151.0 122 64.8
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.1e-34 147.9 118 70.3
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.1e-33 146.7 123 65.0
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 5.6e-33 144.4 123 65.9
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.3e-32 143.3 129 66.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 3.7e-32 141.7 130 63.1
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 4.8e-32 141.4 123 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.0e-30 136.0 109 63.3
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.4e-30 135.2 109 67.0
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 7.6e-30 134.0 86 79.1
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.9e-29 132.1 83 77.1
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.4e-29 130.6 93 71.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.1e-28 130.2 75 85.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.7e-27 125.6 94 74.5
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 6.7e-26 120.9 122 58.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-25 120.2 69 89.9
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.6e-24 116.3 91 70.3
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.4e-23 112.5 125 60.0
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.2e-22 110.2 124 54.0
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.5e-22 109.8 122 54.1
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.6e-22 109.0 72 76.4
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.7e-21 106.3 78 73.1
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.2e-20 101.7 73 71.2
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.4e-18 96.7 91 53.8
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.7e-17 91.3 69 71.0
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 7.4e-17 90.9 46 97.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.2e-16 89.4 80 58.8
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 4.5e-14 81.6 68 60.3
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 6.3e-08 61.2 76 50.0


User provided reference genes

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