Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 2.8e-191 671.8 339 100.0
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 1.7e-55 220.7 330 46.4
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 6.1e-53 212.2 327 45.3
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 8.8e-44 181.8 290 43.8
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 9.1e-41 171.8 345 40.3
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 3.1e-33 146.7 349 37.2
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 3.1e-33 146.7 283 40.3
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.6e-32 144.4 328 35.1
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 3.8e-31 139.8 242 39.7
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 6.5e-31 139.0 229 41.9
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 8.5e-31 138.7 317 37.9
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 9.4e-30 135.2 319 37.0
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 1.2e-29 134.8 321 38.0
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.7e-29 133.7 351 37.0
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 3.6e-29 133.3 344 36.0
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 3.0e-28 130.2 351 36.8
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 1.3e-26 124.8 221 37.6
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 1.4e-25 121.3 312 34.0
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 1.4e-25 121.3 198 44.9
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 4.1e-25 119.8 232 38.8
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 5.4e-25 119.4 295 35.3
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 1.6e-24 117.9 297 34.0
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 2.0e-24 117.5 236 38.6
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 2.7e-24 117.1 326 33.7
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 3.5e-24 116.7 324 34.9
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 1.0e-23 115.2 324 34.6
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 1.7e-23 114.4 320 31.6
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 2.3e-23 114.0 322 31.1
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 4.2e-22 109.8 343 32.9
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 7.2e-22 109.0 317 31.9
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 9.5e-22 108.6 246 36.6
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.2e-21 108.2 290 34.1
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 2.1e-21 107.5 325 32.6
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 2.8e-21 107.1 286 34.6
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 2.8e-21 107.1 292 34.2
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 1.0e-20 105.1 145 43.4
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 5.2e-20 102.8 233 35.2
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 8.9e-20 102.1 317 30.3
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 5.7e-19 99.4 326 30.4
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 5.7e-19 99.4 326 30.4
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 5.7e-19 99.4 137 44.5
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 9.8e-19 98.6 232 34.5
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 9.8e-19 98.6 240 34.2
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 9.8e-19 98.6 287 33.1
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.7e-18 97.8 162 43.2
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 2.2e-18 97.4 346 28.3
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 2.2e-18 97.4 87 55.2
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 3.7e-18 96.7 157 40.8
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 3.7e-18 96.7 125 44.8
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 4.9e-18 96.3 324 28.4
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 1.4e-17 94.7 344 27.9
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.8e-17 94.4 293 30.0
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 2.4e-17 94.0 146 46.6
TWI73G1043 Tripterygium wilfordii HOM05D008729 ORTHO05D006541 2.4e-17 94.0 235 36.2
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 4.1e-17 93.2 139 40.3
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 4.1e-17 93.2 106 46.2
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 5.4e-17 92.8 316 29.7
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 5.4e-17 92.8 99 50.5
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 7.0e-17 92.4 270 31.1
BolC3t14492H Brassica oleracea HOM05D008171 ORTHO05D006541 9.2e-17 92.0 358 27.1
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 9.2e-17 92.0 326 29.1
A03p18070 Brassica napus HOM05D008171 ORTHO05D006541 3.5e-16 90.1 338 28.1
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 3.5e-16 90.1 185 34.6
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 4.5e-16 89.7 316 27.8
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 5.9e-16 89.4 103 47.6
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 2.3e-15 87.4 281 31.7
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 2.9e-15 87.0 153 35.9
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 6.6e-15 85.9 297 29.0
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 8.6e-15 85.5 290 30.3
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 1.1e-14 85.1 153 36.6
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 1.5e-14 84.7 105 45.7
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 1.9e-14 84.3 346 29.8
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 5.6e-14 82.8 311 29.3
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 1.6e-13 81.3 348 28.2
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 3.6e-13 80.1 347 29.4
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 3.6e-13 80.1 113 41.6
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 6.1e-13 79.3 199 34.7
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 1.8e-12 77.8 79 50.6
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 3.1e-12 77.0 86 43.0
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 4.0e-12 76.6 264 30.3
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 6.8e-12 75.9 174 35.1
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.2e-11 75.1 50 66.0
Ciclev10005715m.g Citrus clementina HOM05D008171 ORTHO05D006541 1.5e-11 74.7 254 34.6
Sp4g14600 Schrenkiella parvula HOM05D008171 ORTHO05D006541 2.6e-11 73.9 352 25.3
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 3.4e-11 73.6 156 33.3
Atru.chr6.2064 Acer truncatum HOM05D008171 ORTHO05D006541 5.8e-11 72.8 287 31.0
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 3.7e-10 70.1 179 30.7
Actinidia32333 Actinidia chinensis HOM05D008171 ORTHO05D006541 2.4e-09 67.4 281 30.2
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 1.2e-08 65.1 210 28.6
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 2.0e-08 64.3 90 35.6
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.7e-08 63.9 41 61.0
FAN17G0494 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.7e-08 63.9 41 61.0
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 2.7e-08 63.9 42 59.5
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 2.7e-08 63.9 46 54.3
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 3.5e-08 63.5 42 59.5
RcHm_v2.0_Chr4g0442521 Rosa chinensis HOM05D013250 ORTHO05D006541 3.5e-08 63.5 70 44.3
TPR.G30636 Trifolium pratense HOM05D008729 ORTHO05D006541 3.5e-08 63.5 43 58.1
FAN22G1062 Fragaria x ananassa HOM05D022272 ORTHO05D006541 4.6e-08 63.2 39 61.5
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 6.0e-08 62.8 41 58.5
SalBow3G0463 Salvia bowleyana HOM05D014524 ORTHO05D006541 6.0e-08 62.8 32 84.4
CAN.G184.75 Capsicum annuum HOM05D001868 ORTHO05D009153 7.8e-08 62.4 81 45.7
Medtr5g069080 Medicago truncatula HOM05D008729 ORTHO05D006541 1.3e-07 61.6 41 56.1
FvH4_4g33320 Fragaria vesca HOM05D022272 ORTHO05D006541 1.7e-07 61.2 41 58.5
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 1.7e-07 61.2 210 27.1
unitig_21.g20743 Utricularia gibba HOM05D050672 ORTHO05D006541 3.0e-07 60.5 271 26.9
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 3.9e-07 60.1 181 28.7
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 3.9e-07 60.1 185 29.7
FAN07G2840 Fragaria x ananassa HOM05D004513 ORTHO05D005459 5.0e-07 59.7 133 30.1
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 5.0e-07 59.7 42 57.1
FAN17G2546 Fragaria x ananassa HOM05D013250 ORTHO05D006541 6.6e-07 59.3 164 34.8
TPR.G32534 Trifolium pratense HOM05D008729 ORTHO05D006541 1.1e-06 58.5 42 57.1
Glyma.09G242100 Glycine max HOM05D008729 ORTHO05D006541 1.5e-06 58.2 172 33.7
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 2.5e-06 57.4 187 29.4
Nn3g20906 Nelumbo nucifera HOM05D025356 ORTHO05D279106 4.3e-06 56.6 218 31.2
Duzib106G2051 Durio zibethinus HOM05D008171 ORTHO05D006541 7.3e-06 55.8 199 33.2


User provided reference genes

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