Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 3.6e-79 298.1 144 100.0
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.8e-76 288.5 144 95.1
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 2.8e-76 288.5 144 95.8
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.7e-76 288.1 144 95.1
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.7e-76 288.1 144 95.1
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 3.7e-76 288.1 144 95.1
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 8.2e-76 287.0 144 94.4
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 1.1e-75 286.6 144 95.1
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.8e-75 285.8 144 93.1
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 5.3e-75 284.3 144 93.1
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 5.3e-75 284.3 144 93.1
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 1.2e-74 283.1 144 93.1
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 1.2e-74 283.1 144 92.4
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 1.2e-74 283.1 144 93.1
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 2.7e-74 282.0 144 91.7
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 3.5e-74 281.6 144 92.4
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 7.7e-74 280.4 144 92.4
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.0e-73 280.0 144 91.7
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.0e-73 280.0 144 91.0
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 1.7e-73 279.3 144 91.0
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.7e-73 279.3 144 91.0
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.7e-73 279.3 144 91.0
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.7e-73 279.3 144 91.0
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 1.7e-73 279.3 144 91.0
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.2e-73 278.9 144 91.0
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 3.8e-73 278.1 144 91.0
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 6.5e-73 277.3 144 92.4
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 6.5e-73 277.3 144 90.3
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 1.1e-72 276.6 144 89.6
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.1e-72 276.6 144 91.0
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 1.1e-72 276.6 144 91.0
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 1.1e-72 276.6 144 91.0
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.5e-72 276.2 144 91.0
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.5e-72 276.2 144 90.3
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.9e-72 275.8 144 90.3
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 2.5e-72 275.4 144 90.3
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 5.5e-72 274.2 144 89.6
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 5.5e-72 274.2 144 88.9
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 7.2e-72 273.9 144 88.9
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 7.2e-72 273.9 144 88.9
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 88.2
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.6e-71 272.7 144 89.6
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 1.6e-71 272.7 144 88.9
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.1e-71 272.3 144 87.5
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 2.7e-71 271.9 144 89.6
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 2.7e-71 271.9 144 88.9
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 87.5
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 87.5
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 88.2
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 88.2
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 6.1e-71 270.8 142 88.7
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 88.9
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 87.5
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.0e-70 270.0 144 88.9
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.0e-70 270.0 144 88.2
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.0e-70 270.0 144 88.9
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.2
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.9
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.9
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.2
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.9
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.2
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 87.5
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.2
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 88.9
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 87.5
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 87.5
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 87.5
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 86.8
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 4.0e-70 268.1 142 89.4
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 4.0e-70 268.1 144 87.5
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 4.0e-70 268.1 143 87.4
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 4.0e-70 268.1 144 88.2
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 5.2e-70 267.7 144 87.5
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 5.2e-70 267.7 144 88.2
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 6.8e-70 267.3 144 88.2
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 1.2e-69 266.5 144 86.8
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.5e-69 266.2 144 87.5
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 88.2
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 88.2
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 88.2
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 86.8
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 84.0
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 86.1
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.4e-69 265.0 144 86.8
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 4.4e-69 264.6 144 86.1
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 4.4e-69 264.6 142 88.0
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 7.5e-69 263.8 144 85.4
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 7.5e-69 263.8 144 84.7
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 86.8
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 86.8
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.3e-68 263.1 151 84.1
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.3e-68 263.1 151 84.1
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 87.5
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 2.8e-68 261.9 144 86.8
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 3.7e-68 261.5 144 84.7
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 6.3e-68 260.8 141 86.5
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 84.0
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 1.1e-67 260.0 144 83.3
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 2.4e-67 258.8 143 84.6
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.2e-66 256.5 135 90.4
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 2.0e-66 255.8 144 84.7
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 7.7e-66 253.8 154 80.5
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 1.3e-65 253.1 144 81.2
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 1.7e-65 252.7 144 84.0
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 2.3e-65 252.3 175 72.6
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 3.3e-64 248.4 144 84.0
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.2e-63 246.5 135 88.1
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 3.0e-62 241.9 144 77.8
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 5.7e-61 237.7 139 80.6
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.8e-59 232.6 260 51.2
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 4.5e-58 228.0 144 79.2
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 1.2e-55 219.9 177 62.7
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 8.0e-55 217.2 308 44.2
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 6.8e-54 214.2 140 77.1
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 2.2e-52 209.1 144 71.5
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 4.1e-51 204.9 144 68.1
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 7.8e-50 200.7 141 67.4
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 1.7e-49 199.5 142 67.6
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 3.0e-49 198.7 117 82.9
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.1e-48 196.8 141 67.4
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 5.6e-48 194.5 138 68.1
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 6.2e-47 191.0 142 69.0
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 8.1e-39 164.1 93 82.8
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 6.8e-38 161.0 82 91.5
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.2e-37 160.2 84 89.3
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 7.5e-37 157.5 142 54.2
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 1.4e-35 153.3 89 80.9
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-34 149.8 73 93.2
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 1.6e-34 149.8 73 93.2
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 6.0e-34 147.9 72 97.2
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 6.6e-33 144.4 75 88.0
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 8.6e-33 144.1 75 89.3
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.4e-27 126.7 133 46.6
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 3.2e-27 125.6 143 46.2
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 3.5e-26 122.1 66 84.8
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 6.6e-25 117.9 63 85.7
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 2.5e-24 115.9 133 48.1
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 3.3e-24 115.5 64 84.4
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 2.1e-23 112.8 154 46.8
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 2.4e-22 109.4 74 75.7
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 5.6e-16 88.2 89 52.8
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 1.1e-14 84.0 46 87.0
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 1.7e-12 76.6 99 41.4
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 1.7e-12 76.6 54 72.2
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.6e-07 60.1 30 83.3
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 3.7e-07 58.9 95 44.2


User provided reference genes

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