Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 2.3e-140 502.3 260 100.0
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 5.6e-107 391.3 207 92.3
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 5.3e-89 331.6 201 78.1
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 3.4e-88 328.9 204 78.4
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 2.9e-87 325.9 203 77.3
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 6.4e-87 324.7 207 74.9
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 1.4e-86 323.6 202 76.2
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 3.2e-86 322.4 205 75.1
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 5.5e-86 321.6 205 75.6
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 7.1e-86 321.2 205 75.6
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 9.3e-86 320.9 199 77.4
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 9.3e-86 320.9 202 76.2
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 9.3e-86 320.9 204 76.0
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 1.2e-85 320.5 197 78.7
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 1.6e-85 320.1 199 76.9
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 2.1e-85 319.7 205 75.6
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 2.7e-85 319.3 208 75.5
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 2.7e-85 319.3 200 77.5
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 2.7e-85 319.3 200 76.0
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 2.7e-85 319.3 201 75.1
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 3.5e-85 318.9 200 77.0
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 4.6e-85 318.5 196 77.6
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 6.0e-85 318.2 205 75.6
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 6.0e-85 318.2 200 78.5
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 7.9e-85 317.8 201 75.1
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 1.0e-84 317.4 193 77.2
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 1.0e-84 317.4 193 77.2
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.3e-84 316.2 197 75.6
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 3.0e-84 315.8 200 75.5
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 5.1e-84 315.1 203 74.9
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 5.1e-84 315.1 200 77.5
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 6.7e-84 314.7 200 76.5
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 6.7e-84 314.7 201 74.6
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 6.7e-84 314.7 201 73.6
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 6.7e-84 314.7 200 75.5
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 8.7e-84 314.3 201 75.6
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 1.1e-83 313.9 208 74.5
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.1e-83 313.9 200 77.5
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 1.9e-83 313.2 201 74.6
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 2.5e-83 312.8 200 76.5
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 3.3e-83 312.4 199 75.4
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 4.3e-83 312.0 200 75.0
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 5.6e-83 311.6 194 77.3
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 5.6e-83 311.6 200 72.5
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 7.4e-83 311.2 203 73.4
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 7.4e-83 311.2 197 74.6
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 1.3e-82 310.5 199 74.4
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 1.6e-82 310.1 187 77.0
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 2.1e-82 309.7 205 74.1
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 3.7e-82 308.9 195 75.4
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 6.2e-82 308.1 228 67.5
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 1.8e-81 306.6 201 72.6
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 3.1e-81 305.8 201 73.6
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 4.0e-81 305.4 209 73.7
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 4.0e-81 305.4 207 71.0
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 6.9e-81 304.7 207 72.0
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 1.2e-80 303.9 209 74.2
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 1.2e-80 303.9 209 74.2
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 2.6e-80 302.8 208 73.1
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 5.8e-80 301.6 205 72.7
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 1.0e-79 300.8 207 71.0
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.0e-79 300.8 207 73.4
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 2.9e-79 299.3 199 71.9
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 2.9e-79 299.3 196 71.9
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 1.9e-78 296.6 201 72.1
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 1.9e-78 296.6 230 66.1
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 2.5e-78 296.2 203 71.4
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 3.2e-78 295.8 198 71.7
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 7.1e-78 294.7 223 66.8
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 4.6e-77 292.0 173 78.0
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 7.9e-77 291.2 194 72.7
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 1.8e-76 290.0 211 68.7
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 8.7e-76 287.7 201 70.6
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 8.7e-76 287.7 205 71.7
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.5e-75 286.2 201 71.6
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 6.3e-74 281.6 201 70.6
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 8.2e-74 281.2 194 71.6
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 2.4e-73 279.6 251 57.4
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 4.1e-73 278.9 190 72.6
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 6.9e-73 278.1 194 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 9.0e-73 277.7 182 72.5
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 9.0e-73 277.7 203 68.5
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 2.2e-71 273.1 241 59.8
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 5.0e-71 271.9 194 68.6
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 4.6e-69 265.4 223 61.0
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 2.5e-67 259.6 158 77.2
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 2.8e-66 256.1 207 63.3
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 4.8e-66 255.4 214 64.5
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 8.2e-66 254.6 200 66.5
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.4e-65 253.8 253 54.9
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 2.2e-63 246.5 209 62.2
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 1.6e-61 240.4 174 66.7
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 4.6e-61 238.8 158 70.3
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 1.0e-60 237.7 254 53.5
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 3.7e-58 229.2 140 76.4
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.4e-57 226.5 180 60.0
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 3.1e-57 226.1 211 58.3
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 2.6e-56 223.0 135 74.1
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 9.4e-54 214.5 160 63.8
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 2.7e-53 213.0 201 58.2
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 2.3e-52 209.9 220 53.6
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 3.9e-52 209.1 197 57.4
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 6.7e-52 208.4 205 53.2
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 6.7e-52 208.4 191 55.0
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 8.2e-50 201.4 138 68.8
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 1.7e-47 193.7 131 67.9
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 5.0e-47 192.2 179 53.1
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 6.1e-45 185.3 130 67.7
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 2.0e-43 180.3 112 73.2
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 4.4e-43 179.1 108 75.9
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 1.3e-42 177.6 111 72.1
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 1.3e-42 177.6 160 56.2
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 1.0e-39 167.9 180 53.3
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 3.2e-38 162.9 156 49.4
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 9.8e-35 151.4 94 73.4
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 4.1e-33 146.0 101 66.3
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 2.0e-32 143.7 97 71.1
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 2.7e-32 143.3 93 77.4
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 4.5e-32 142.5 92 77.2
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 4.5e-32 142.5 86 82.6
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.1e-30 137.9 93 75.3
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 2.5e-30 136.7 80 85.0
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 7.2e-30 135.2 89 78.7
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 7.5e-27 125.2 86 65.1
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 1.6e-24 117.5 74 70.3
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.3e-22 109.8 66 72.7
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 3.5e-16 89.7 61 65.6
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 1.0e-15 88.2 48 79.2
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 5.6e-14 82.4 54 68.5
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 1.4e-12 77.8 61 60.7
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 3.4e-11 73.2 43 83.7
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 5.8e-11 72.4 219 29.7
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 9.8e-11 71.6 64 56.2
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 8.3e-10 68.6 98 42.9
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 2.1e-08 63.9 138 33.3
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 2.7e-08 63.5 38 73.7
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 4.6e-08 62.8 38 73.7
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 4.6e-08 62.8 46 71.7
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 7.8e-08 62.0 39 71.8
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 2.3e-07 60.5 33 81.8
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.5e-06 57.0 39 66.7
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 4.3e-06 56.2 61 54.1


User provided reference genes

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