Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.0e-297 1025.0 514 100.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 5.7e-228 794.3 515 78.3
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.5e-225 786.2 512 76.6
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 4.1e-218 761.5 512 74.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 7.0e-218 760.8 595 67.1
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 3.5e-217 758.4 515 74.6
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.7e-216 756.1 515 73.6
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 6.5e-216 754.2 512 73.8
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.1e-215 753.4 515 73.2
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.7e-214 748.8 514 74.3
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 8.8e-213 743.8 513 73.9
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 5.7e-212 741.1 514 71.6
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.4e-212 740.7 514 72.6
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.2e-211 739.2 514 72.2
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.8e-211 738.0 517 71.8
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 6.3e-211 737.6 515 72.8
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.1e-210 736.9 514 73.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 3.1e-210 735.3 515 73.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-209 733.4 517 72.9
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-209 733.4 515 72.4
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.0e-209 732.6 515 71.8
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.7e-209 730.7 514 71.6
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-208 730.3 522 71.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.0e-204 716.1 514 71.2
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 3.7e-203 711.8 514 70.6
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 6.3e-203 711.1 513 67.8
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.4e-202 709.9 515 71.1
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.4e-202 709.1 513 67.6
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.1e-202 708.4 513 67.4
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.0e-202 707.6 515 70.7
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.0e-201 706.1 512 67.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.0e-201 706.1 512 67.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.0e-201 706.1 512 68.4
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.7e-201 705.7 527 68.5
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.5e-201 705.3 513 67.6
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.5e-201 705.3 576 64.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 4.5e-201 704.9 513 68.2
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.0e-200 703.7 513 68.4
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.2e-200 702.6 515 68.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.2e-200 702.6 538 67.7
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 5.0e-200 701.4 501 68.5
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 6.5e-200 701.0 516 69.8
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.5e-200 700.7 516 69.6
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 8.5e-200 700.7 513 67.3
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.5e-199 699.1 514 69.1
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.5e-199 699.1 514 69.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 4.2e-199 698.4 503 69.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 9.4e-199 697.2 513 67.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.6e-198 695.3 515 67.4
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 6.1e-198 694.5 515 67.0
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 8.0e-198 694.1 497 69.0
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.6e-196 689.1 514 67.3
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 9.8e-196 687.2 513 66.1
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 4.8e-195 684.9 469 71.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.8e-194 682.9 515 67.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.6e-193 679.9 515 67.4
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 3.5e-193 678.7 478 70.5
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 4.5e-193 678.3 515 67.0
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.3e-192 676.8 515 67.4
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.3e-192 676.8 562 62.8
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.7e-192 676.4 515 67.2
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.3e-192 676.0 457 72.4
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.3e-192 676.0 515 66.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.1e-191 673.7 470 70.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.9e-191 672.9 515 65.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.5e-191 672.5 514 66.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.5e-191 672.5 470 70.9
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 7.2e-191 671.0 515 67.0
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 2.1e-190 669.5 516 65.9
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 3.6e-190 668.7 516 66.1
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 8.0e-190 667.5 517 67.3
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.8e-189 666.4 504 68.7
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.2e-188 663.7 515 65.4
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.6e-188 662.5 492 68.3
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 2.6e-188 662.5 515 65.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 8.3e-187 657.5 498 66.7
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-186 656.4 439 74.0
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.4e-186 656.0 516 64.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 4.1e-186 655.2 511 65.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-185 653.7 549 62.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.7e-185 652.5 514 64.8
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 3.5e-185 652.1 514 66.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 4.5e-185 651.7 470 68.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.9e-185 651.4 516 64.9
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.7e-184 649.8 515 63.7
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.5e-183 646.0 432 72.0
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 9.5e-183 644.0 456 69.3
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 3.6e-182 642.1 469 67.6
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 4.7e-182 641.7 514 64.6
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.0e-181 640.6 515 64.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.4e-181 640.2 500 67.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 2.3e-181 639.4 496 65.7
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.8e-180 634.0 492 65.0
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 3.7e-179 632.1 492 64.8
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.4e-178 629.4 488 65.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.9e-176 622.1 434 70.5
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.2e-172 610.5 461 66.2
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 6.0e-169 598.2 423 70.0
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 2.3e-168 596.3 522 59.4
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.9e-168 595.5 464 64.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 3.9e-168 595.5 454 64.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.5e-167 593.6 434 67.3
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.1e-165 587.4 355 81.7
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.1e-165 587.4 554 57.8
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.4e-154 549.7 371 73.6
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.2e-153 547.4 382 72.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.2e-153 547.4 499 56.9
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-151 539.3 415 67.0
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.7e-145 519.6 514 55.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.6e-142 510.4 448 59.8
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 8.1e-134 481.5 384 64.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-119 434.5 373 58.2
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.9e-119 433.7 477 48.2
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.9e-119 433.7 478 50.0
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 3.1e-117 426.4 391 60.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.7e-113 413.3 438 49.8
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.1e-113 412.1 495 47.1
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.8e-110 402.5 277 70.4
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-102 377.9 327 62.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 9.8e-79 298.5 685 34.0
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.7e-75 287.7 467 38.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.4e-71 273.5 460 37.2
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.0e-68 264.2 509 38.3
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 8.6e-67 258.8 245 57.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-57 228.4 157 73.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.8e-57 227.3 369 36.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 3.6e-57 226.9 226 55.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.7e-51 208.0 508 31.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.9e-38 163.3 102 79.4
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 8.4e-38 162.5 210 43.3
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 7.1e-37 159.5 249 38.2
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-34 151.0 92 80.4
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 6.9e-32 142.9 127 62.2
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 7.4e-26 122.9 347 28.0
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 6.2e-17 93.2 112 49.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.2e-13 80.9 65 61.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 3.9e-11 73.9 49 77.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 1.1e-10 72.4 44 70.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-10 70.9 66 63.6
ClCG09G012810 Citrullus lanatus HOM05D000686 ORTHO05D000512 8.5e-06 56.2 429 26.1


User provided reference genes

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