Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 8.3e-21 103.2 71 100.0
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.4e-15 85.9 71 74.6
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 1.1e-12 76.3 71 71.8
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.9e-12 75.5 71 66.2
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 1.9e-12 75.5 71 64.8
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 9.2e-12 73.2 72 65.3
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 1.2e-11 72.8 69 82.6
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 1.6e-11 72.4 69 65.2
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.6e-11 72.4 70 61.4
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.5e-11 71.2 71 67.6
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 3.5e-11 71.2 69 63.8
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 4.6e-11 70.9 69 63.8
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 2.3e-10 68.6 66 65.2
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 5.1e-10 67.4 69 65.2
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 5.1e-10 67.4 58 67.2
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 6.6e-10 67.0 58 70.7
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 8.6e-10 66.6 69 60.9
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 1.5e-09 65.9 59 64.4
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.5e-09 65.9 63 61.9
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 1.5e-09 65.9 64 73.4
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 2.5e-09 65.1 67 61.2
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 3.3e-09 64.7 64 62.5
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 4.3e-09 64.3 66 56.1
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 5.6e-09 63.9 62 62.9
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 5.6e-09 63.9 71 59.2
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.3e-09 63.5 54 70.4
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 7.3e-09 63.5 71 62.0
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 9.5e-09 63.2 66 78.8
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 9.5e-09 63.2 59 61.0
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.2e-08 62.8 69 58.0
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.6e-08 62.4 71 60.6
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.6e-08 62.4 58 65.5
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 1.6e-08 62.4 67 62.7
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.6e-08 62.4 66 59.1
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.1e-08 62.0 70 55.7
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.1e-08 62.0 64 60.9
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.8e-08 61.6 48 70.8
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.8e-08 61.6 48 70.8
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.8e-08 61.6 66 63.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 3.6e-08 61.2 60 66.7
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 3.6e-08 61.2 69 63.8
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 3.6e-08 61.2 41 87.8
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 4.7e-08 60.8 56 66.1
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 4.7e-08 60.8 69 60.9
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 4.7e-08 60.8 69 59.4
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 4.7e-08 60.8 69 59.4
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 4.7e-08 60.8 64 60.9
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 6.2e-08 60.5 63 66.7
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 6.2e-08 60.5 62 61.3
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 8.1e-08 60.1 55 67.3
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 1.1e-07 59.7 62 61.3
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.1e-07 59.7 61 59.0
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 1.4e-07 59.3 58 58.6
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.4e-07 59.3 48 66.7
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.4e-07 59.3 58 58.6
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.4e-07 59.3 64 60.9
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 1.4e-07 59.3 62 69.4
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 1.8e-07 58.9 71 56.3
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.8e-07 58.9 62 62.9
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 2.4e-07 58.5 58 58.6
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 3.1e-07 58.2 48 66.7
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 4.0e-07 57.8 48 66.7
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.0e-07 57.8 50 68.0
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 4.0e-07 57.8 71 56.3
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 5.2e-07 57.4 64 62.5
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 5.2e-07 57.4 51 64.7
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 5.2e-07 57.4 61 75.4
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 6.8e-07 57.0 56 60.7
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 8.9e-07 56.6 50 68.0
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.2e-06 56.2 49 67.3
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.2e-06 56.2 49 67.3
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 1.2e-06 56.2 52 67.3
Medtr8g013640 Medicago truncatula HOM05D005458 ORTHO05D005672 1.2e-06 56.2 56 76.8
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.5e-06 55.8 49 69.4
Gohir.A07G200800 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.5e-06 55.8 49 93.9
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.5e-06 55.8 54 63.0
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 2.0e-06 55.5 47 63.8
CSS0011220 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 2.0e-06 55.5 69 75.4
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 2.0e-06 55.5 37 78.4
Actinidia39967 Actinidia chinensis HOM05D005458 ORTHO05D005672 2.6e-06 55.1 71 71.8
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 2.6e-06 55.1 43 74.4
Psat4g203440 Pisum sativum HOM05D005458 ORTHO05D005672 2.6e-06 55.1 69 71.0
Aa31LG8G10780 Aethionema arabicum HOM05D005458 ORTHO05D005672 3.4e-06 54.7 68 77.9
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 3.4e-06 54.7 45 73.3
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 3.4e-06 54.7 65 61.5
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 4.4e-06 54.3 48 68.8
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 4.4e-06 54.3 48 62.5
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 4.4e-06 54.3 66 72.7
Hma1.2p1_0187F.1_g082170 Hydrangea macrophylla HOM05D005458 ORTHO05D005672 4.4e-06 54.3 42 81.0
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 5.8e-06 53.9 49 65.3
Haze_11612 Corylus avellana HOM05D005458 ORTHO05D005672 5.8e-06 53.9 45 75.6
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 7.6e-06 53.5 44 75.0
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 7.6e-06 53.5 47 72.3
FAN12G0355 Fragaria x ananassa HOM05D005458 ORTHO05D005672 7.6e-06 53.5 47 72.3
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 7.6e-06 53.5 71 59.2
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 7.6e-06 53.5 48 66.7


User provided reference genes

Program Settings