Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 0.0e+00 2823.1 1511 100.0
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 0.0e+00 1455.7 1523 59.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.7e-275 952.6 1614 45.6
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 3.5e-225 786.6 1914 36.7
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.7e-200 704.5 1575 39.3
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 7.3e-199 699.1 1852 36.4
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.6e-196 690.6 1661 37.6
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 8.4e-195 685.6 1840 37.0
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 6.2e-190 669.5 1839 36.3
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 5.2e-189 666.4 1866 35.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 2.3e-184 651.0 1820 36.9
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.0e-180 637.9 1859 35.9
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 4.2e-170 603.6 1910 33.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.6e-166 591.7 1662 36.2
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.3e-158 565.5 1893 33.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.3e-158 563.1 1899 33.4
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 6.9e-157 559.7 1600 33.7
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 6.5e-155 553.1 1860 33.5
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.4e-146 525.4 1731 34.3
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.2e-142 511.5 1754 33.3
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.8e-142 510.4 1809 32.8
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 7.2e-138 496.5 1545 34.1
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 9.4e-138 496.1 1812 33.5
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.6e-137 495.4 1636 31.7
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.0e-136 492.7 2057 30.8
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.0e-136 492.7 1844 32.4
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.7e-134 484.2 1749 32.3
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.8e-134 483.8 1794 32.3
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.6e-132 478.8 1623 33.3
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-132 478.8 1670 33.7
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 6.3e-126 456.8 1671 31.3
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 2.1e-121 441.8 1611 33.4
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.7e-121 440.7 1543 31.2
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.6e-119 434.9 1779 32.0
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.3e-115 422.5 1719 31.9
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 8.0e-113 413.3 1736 30.2
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.4e-112 412.5 1775 29.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.7e-110 404.4 1649 32.4
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 3.1e-109 401.4 1704 29.8
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.5e-106 391.7 1678 30.8
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 5.6e-106 390.6 1705 29.6
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 3.4e-103 381.3 806 40.9
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 4.4e-103 380.9 1621 30.9
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 7.0e-101 373.6 1665 31.1
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 9.2e-101 373.2 1725 29.0
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.7e-100 371.7 1732 30.6
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.7e-100 371.7 1611 30.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.6e-100 370.9 665 46.3
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 6.6e-99 367.1 1668 30.7
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-98 366.3 1871 29.1
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-98 366.3 1622 30.3
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 7.3e-98 363.6 1786 29.8
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.8e-97 361.7 1719 29.3
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.0e-95 355.5 1692 30.7
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.4e-95 354.8 1755 29.9
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.2e-94 352.1 1932 28.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.9e-94 351.7 1649 30.3
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.7e-94 351.3 1682 29.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.9e-90 339.0 1817 28.6
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 4.3e-90 337.8 1795 28.1
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 6.8e-88 330.5 1789 29.7
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 6.8e-88 330.5 1980 27.2
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.7e-86 325.9 1727 30.1
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 1.1e-85 323.2 1717 28.1
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.3e-83 316.2 2044 26.3
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 3.9e-83 314.7 1420 28.5
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 5.1e-83 314.3 2028 27.0
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-82 313.2 515 47.8
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 4.3e-82 311.2 1735 29.3
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 2.1e-81 308.9 657 44.6
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 6.2e-81 307.4 1363 28.0
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.8e-80 305.8 553 41.2
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 8.9e-80 303.5 1702 28.2
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 9.9e-79 300.1 1612 29.2
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.4e-78 297.4 459 52.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.4e-78 297.0 1789 26.7
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.4e-77 296.2 1673 28.3
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.4e-77 294.3 498 49.8
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 5.4e-77 294.3 1662 29.7
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 1.2e-76 293.1 833 36.9
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.0e-75 290.0 1783 26.2
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.4e-72 278.9 1787 28.7
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 9.9e-71 273.5 820 35.0
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.3e-70 273.1 1788 27.6
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.9e-69 269.2 1616 26.1
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 2.4e-69 268.9 1771 28.0
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 4.2e-69 268.1 1624 27.2
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 4.2e-69 268.1 1886 28.2
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 9.3e-69 266.9 820 34.8
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.5e-68 265.0 1792 27.5
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 7.8e-68 263.8 1587 27.5
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.9e-66 259.2 464 48.5
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.5e-66 258.8 1813 26.6
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.6e-65 256.1 1932 27.6
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 9.0e-64 250.4 1817 27.2
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 7.6e-63 247.3 1768 27.3
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 6.4e-62 244.2 1856 27.7
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.6e-60 239.6 1755 28.5
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.1e-60 239.2 1676 25.0
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.7e-60 238.8 1721 27.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.0e-60 237.7 1642 25.5
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 3.0e-59 235.3 1696 28.0
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 5.1e-59 234.6 1866 26.8
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.1e-58 233.4 1858 27.8
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.2e-53 214.9 1929 26.9
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 2.7e-52 212.2 652 32.5
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.1e-48 198.7 246 47.2
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 5.8e-47 194.5 1631 24.6
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.7e-44 185.7 535 32.0
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.5e-44 185.3 1652 26.0
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 5.9e-39 167.9 290 39.7
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 2.2e-38 166.0 650 34.0
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 2.7e-36 159.1 693 34.1
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 4.6e-36 158.3 1676 25.4
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.0e-35 155.6 1352 24.1
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.8e-27 127.5 488 28.5
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 4.4e-26 125.2 393 31.0
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.2e-25 122.9 284 32.7
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 2.4e-24 119.4 299 34.4
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.1e-24 119.0 1648 24.4
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 2.6e-23 115.9 283 35.0
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 8.5e-22 110.9 265 45.3
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.2e-21 108.6 75 80.0
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 7.2e-21 107.8 246 33.7
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 9.4e-21 107.5 67 74.6
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 2.7e-20 105.9 246 33.3
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 6.1e-20 104.8 664 28.9
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 8.8e-19 100.9 244 33.6
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 3.3e-18 99.0 107 49.5
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 5.7e-18 98.2 401 32.7
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.7e-17 96.7 325 29.5
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 3.1e-16 92.4 217 32.7
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.9e-14 85.9 86 58.1
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 8.5e-14 84.3 60 70.0
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 2.5e-13 82.8 192 36.5
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 3.2e-13 82.4 59 69.5
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 7.2e-13 81.3 195 34.4
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 7.2e-13 81.3 74 59.5
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 2.1e-12 79.7 423 29.6
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 2.7e-12 79.3 58 65.5
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 2.0e-10 73.2 74 56.8
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.7e-09 70.1 445 29.2
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.2e-09 69.7 123 46.3
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.1e-08 67.4 59 66.1
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 1.1e-08 67.4 233 35.6
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 7.0e-08 64.7 295 28.1
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.0e-07 63.2 421 24.0
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 2.2e-06 59.7 54 64.8


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