Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 7.5e-138 493.8 244 100.0
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 4.6e-103 378.3 243 74.1
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.3e-101 371.7 239 74.5
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 5.6e-101 371.3 243 74.1
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 7.6e-98 360.9 244 71.7
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.9e-96 356.3 250 69.2
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 4.2e-96 355.1 238 71.8
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.6e-95 353.2 244 71.7
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 3.5e-95 352.1 244 70.5
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.5e-95 352.1 248 69.0
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 6.0e-95 351.3 244 69.7
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 2.3e-94 349.4 244 70.1
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 3.0e-94 349.0 250 68.4
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 5.1e-94 348.2 251 68.5
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 8.7e-94 347.4 247 68.4
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.1e-93 347.1 249 68.3
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.5e-93 346.7 248 68.1
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 3.3e-93 345.5 251 66.5
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 7.4e-93 344.4 250 65.6
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 9.6e-93 344.0 245 68.6
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.1e-92 342.8 245 68.2
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.1e-92 342.8 245 67.8
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 2.8e-92 342.4 250 66.0
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 8.2e-92 340.9 248 66.5
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.4e-91 340.1 237 67.5
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.4e-91 340.1 245 67.8
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 2.4e-91 339.3 237 66.2
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 3.1e-91 339.0 250 66.8
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 4.0e-91 338.6 246 67.5
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 5.3e-91 338.2 237 67.1
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 9.0e-91 337.4 250 65.6
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.6e-90 335.9 246 67.1
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.4e-90 335.5 247 66.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 5.8e-90 334.7 246 69.5
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.7e-89 333.2 236 66.1
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.7e-89 333.2 244 64.3
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 2.2e-89 332.8 237 65.0
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 2.2e-89 332.8 245 66.9
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.8e-89 332.0 246 65.0
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 4.9e-89 331.6 251 67.3
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 8.4e-89 330.9 236 65.3
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 8.4e-89 330.9 244 66.4
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 8.4e-89 330.9 244 63.9
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 8.4e-89 330.9 245 64.9
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.4e-88 330.1 245 64.1
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.9e-88 329.7 237 64.1
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.5e-88 329.3 244 64.3
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 3.2e-88 328.9 245 64.5
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 4.2e-88 328.6 246 65.0
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.5e-88 328.2 244 63.9
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 7.1e-88 327.8 237 64.6
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 7.1e-88 327.8 237 65.0
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 9.3e-88 327.4 244 64.8
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 9.3e-88 327.4 242 67.4
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.2e-87 327.0 237 65.8
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 2.7e-87 325.9 237 64.1
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 2.7e-87 325.9 244 63.9
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 3.5e-87 325.5 242 64.9
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 7.9e-87 324.3 244 62.7
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 7.9e-87 324.3 243 64.6
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.0e-86 323.9 240 64.2
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.3e-86 323.6 246 63.8
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.3e-86 322.8 251 63.7
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.1e-85 320.5 244 65.2
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.9e-85 319.7 244 64.8
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.9e-85 319.7 240 64.2
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.9e-85 319.7 248 62.5
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 2.5e-85 319.3 246 64.2
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 5.7e-85 318.2 245 63.7
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 3.7e-84 315.5 282 56.7
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 4.8e-84 315.1 241 63.5
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 1.1e-83 313.9 218 68.3
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 3.4e-82 308.9 255 60.8
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.3e-81 307.0 246 60.2
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.3e-81 307.0 242 62.8
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.7e-81 306.6 243 60.5
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.4e-80 303.5 245 60.4
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.4e-80 303.5 205 70.7
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 2.5e-80 302.8 242 61.2
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 3.2e-80 302.4 243 61.3
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 1.6e-79 300.1 206 69.4
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.7e-79 299.3 244 59.8
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.4e-78 297.0 274 54.7
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.8e-78 296.6 206 68.9
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.0e-78 295.8 213 66.2
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 4.3e-77 292.0 200 68.5
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 8.2e-76 287.7 210 62.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 6.9e-75 284.6 210 62.4
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 6.9e-75 284.6 182 74.2
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 2.6e-74 282.7 258 57.8
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.7e-73 280.0 211 63.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.2e-73 279.6 240 57.9
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 6.5e-73 278.1 211 62.6
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 1.1e-72 277.3 211 62.6
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 1.1e-72 277.3 211 62.6
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.2e-72 274.6 216 63.9
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 6.7e-70 268.1 268 51.1
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 7.4e-69 264.6 196 65.3
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 8.2e-68 261.2 192 64.1
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.8e-67 260.0 241 51.5
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 4.1e-67 258.8 245 53.5
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 5.3e-67 258.5 238 54.2
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.7e-65 253.4 239 50.2
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.2e-65 253.1 238 52.9
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.9e-65 252.7 203 60.6
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.5e-65 251.5 243 49.8
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.5e-65 251.1 239 51.0
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 9.4e-64 247.7 186 64.0
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.8e-60 236.1 166 64.5
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.1e-59 234.2 242 52.5
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.3e-59 231.9 239 47.3
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.6e-58 229.6 164 64.0
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 4.5e-58 228.8 230 53.0
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 5.9e-58 228.4 200 53.0
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-57 224.9 218 51.4
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.1e-56 224.2 183 59.0
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 7.2e-56 221.5 244 54.1
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 8.0e-55 218.0 242 48.8
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 8.8e-54 214.5 144 70.8
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.5e-53 213.8 205 57.1
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 4.4e-53 212.2 214 48.6
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.5e-53 211.5 198 55.1
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 2.2e-52 209.9 173 59.0
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.8e-52 209.5 214 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.1e-51 206.1 185 53.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.1e-48 197.6 226 49.1
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.2e-48 196.1 166 59.6
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 8.0e-47 191.4 172 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.7e-44 183.7 194 47.9
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 6.3e-44 181.8 113 79.6
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 2.4e-43 179.9 129 64.3
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 4.1e-43 179.1 236 44.5
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 3.3e-40 169.5 192 47.4
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.1e-39 166.8 187 49.7
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 4.0e-38 162.5 220 42.3
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 7.5e-37 158.3 110 72.7
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.8e-37 157.9 105 71.4
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.3e-33 147.5 108 63.0
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 8.6e-33 144.8 106 62.3
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 5.8e-29 132.1 100 62.0
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.0e-27 125.2 161 44.7
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 3.5e-26 122.9 225 38.2
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 7.3e-24 115.2 169 38.5
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.9e-20 102.4 99 49.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 6.6e-17 92.0 66 66.7
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.7e-12 77.4 61 50.8
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-12 75.1 81 49.4
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 3.5e-10 69.7 110 35.5
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.5e-10 69.7 72 45.8
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 6.6e-09 65.5 61 55.7
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.9e-08 63.9 40 60.0


User provided reference genes

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