Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 4.2e-126 454.9 263 100.0
Manes.03G140301 Manihot esculenta HOM05D005871 ORTHO05D003654 3.4e-104 382.1 263 88.6
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 4.4e-51 205.7 210 60.5
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 3.8e-34 149.4 268 44.8
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 3.0e-31 139.8 263 46.0
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 9.6e-30 134.8 263 46.4
Potri.001G366500 Populus trichocarpa HOM05D005871 ORTHO05D003654 2.4e-28 130.2 275 40.4
Lj6g0021470 Lotus japonicus HOM05D005871 ORTHO05D003654 9.0e-28 128.3 250 41.2
VMungo0647G1579 Vigna mungo HOM05D005871 ORTHO05D003654 5.8e-27 125.6 255 38.8
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 2.2e-26 123.6 271 41.3
Duzib170G1062 Durio zibethinus HOM05D005871 ORTHO05D003654 2.2e-26 123.6 260 40.8
Phvul.008G278200 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 3.8e-26 122.9 257 37.0
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 7.1e-25 118.6 262 38.2
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 1.2e-24 117.9 252 40.9
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 2.1e-24 117.1 283 39.2
Psat0s4683g0040 Pisum sativum HOM05D005871 ORTHO05D003654 2.1e-24 117.1 263 39.9
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 3.5e-24 116.3 267 41.9
Lalb_Chr04g0247911 Lupinus albus HOM05D005871 ORTHO05D003654 4.6e-24 115.9 270 33.3
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 1.3e-23 114.4 263 38.0
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 1.3e-23 114.4 247 37.7
TPR.G8596 Trifolium pratense HOM05D005871 ORTHO05D003654 2.3e-23 113.6 274 40.5
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.1e-23 112.5 264 39.0
Medtr5g095540 Medicago truncatula HOM05D005871 ORTHO05D003654 5.1e-23 112.5 284 40.8
Medtr5g095630 Medicago truncatula HOM05D005871 ORTHO05D003654 1.9e-22 110.5 264 42.0
CiPaw.11G202600 Carya illinoinensis HOM05D005871 ORTHO05D003654 2.5e-22 110.2 260 41.9
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 3.3e-22 109.8 275 34.5
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 5.6e-22 109.0 264 39.8
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 5.6e-22 109.0 266 38.3
Sabra16G0239800 Salix brachista HOM05D005871 ORTHO05D003654 5.6e-22 109.0 250 41.6
Glyma.14G014200 Glycine max HOM05D005871 ORTHO05D003654 2.8e-21 106.7 271 38.7
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.6e-21 106.3 262 41.6
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 8.1e-21 105.1 264 38.3
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.1e-20 104.8 265 43.0
Glyma.02G299500 Glycine max HOM05D005871 ORTHO05D003654 1.8e-20 104.0 267 35.2
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 1.8e-20 104.0 245 44.5
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.1e-20 103.2 264 40.2
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.9e-20 102.1 267 37.1
VMungo0540G0718 Vigna mungo HOM05D005871 ORTHO05D003654 2.0e-19 100.5 260 34.2
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 2.6e-19 100.1 264 40.5
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 9.9e-19 98.2 276 35.5
Phvul.006G140600 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 1.7e-18 97.4 269 34.2
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 2.2e-18 97.1 262 40.8
TPR.G35473 Trifolium pratense HOM05D005871 ORTHO05D003654 2.2e-18 97.1 257 36.2
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 2.9e-18 96.7 263 37.6
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 2.9e-18 96.7 242 36.8
TPR.G8607 Trifolium pratense HOM05D005871 ORTHO05D003654 3.8e-18 96.3 279 37.6
Atru.chr2.3672 Acer truncatum HOM05D005871 ORTHO05D003654 1.9e-17 94.0 277 38.3
Psat2g007960 Pisum sativum HOM05D005871 ORTHO05D003654 5.4e-17 92.4 249 40.2
PGR083G2866 Punica granatum HOM05D005871 ORTHO05D003654 7.1e-17 92.0 272 37.9
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 9.3e-17 91.7 258 36.8
Psat2g008040 Pisum sativum HOM05D005871 ORTHO05D003654 9.3e-17 91.7 272 37.5
Lalb_Chr18g0057151 Lupinus albus HOM05D005871 ORTHO05D003654 1.6e-16 90.9 259 34.0
QL05p068166 Quercus lobata HOM05D005871 ORTHO05D003654 3.5e-16 89.7 263 33.1
Eucgr.F02056 Eucalyptus grandis HOM05D005871 ORTHO05D003654 6.0e-16 89.0 277 32.9
Sed0014857 Sechium edule HOM05D005871 ORTHO05D003654 6.0e-16 89.0 263 37.6
Nn1g03208 Nelumbo nucifera HOM05D005871 ORTHO05D003654 3.0e-15 86.7 251 32.7
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 5.1e-15 85.9 246 34.6
Thecc.06G238200 Theobroma cacao HOM05D005871 ORTHO05D003654 4.3e-14 82.8 264 37.5
Ah.09g234010 Amaranthus hybridus HOM05D005871 ORTHO05D003654 1.4e-12 77.8 247 32.0
CiPaw.03G281200 Carya illinoinensis HOM05D005871 ORTHO05D003654 1.8e-12 77.4 236 37.7
Ah.04g166520 Amaranthus hybridus HOM05D005871 ORTHO05D003654 2.4e-12 77.0 248 37.1
Thecc.01G195400 Theobroma cacao HOM05D008806 ORTHO05D003654 3.1e-12 76.6 265 31.7
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 5.3e-12 75.9 247 29.6
Medtr3g058890 Medicago truncatula HOM05D005871 ORTHO05D003654 6.9e-12 75.5 188 34.0
Gorai.010G189400 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.5e-11 74.3 239 33.5
TWI38G1492 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 2.0e-11 73.9 264 31.8
FAN02G3820 Fragaria x ananassa HOM05D005871 ORTHO05D003654 2.6e-11 73.6 245 31.0
MD00G1057200 Malus domestica HOM05D005871 ORTHO05D003654 3.4e-11 73.2 260 33.1
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 3.4e-11 73.2 245 31.0
TAR629G2179 Trochodendron aralioides HOM05D005871 ORTHO05D003654 4.5e-11 72.8 185 38.4
MSTRG.6992 Avicennia marina HOM05D018445 ORTHO05D003654 7.6e-11 72.0 250 36.8
CiPaw.09G107300 Carya illinoinensis HOM05D005871 ORTHO05D003654 7.6e-11 72.0 256 32.8
Eucgr.F02055 Eucalyptus grandis HOM05D005871 ORTHO05D003654 7.6e-11 72.0 266 28.6
Gohir.D06G162300 Gossypium hirsutum HOM05D005871 ORTHO05D003654 7.6e-11 72.0 213 33.3
Actinidia02292 Actinidia chinensis HOM05D005871 ORTHO05D003654 1.3e-10 71.2 270 31.9
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 1.3e-10 71.2 247 28.3
Duzib133G1309 Durio zibethinus HOM05D008806 ORTHO05D003654 1.3e-10 71.2 240 33.8
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 1.3e-10 71.2 254 29.9
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 2.9e-10 70.1 262 32.1
CAN.G337.14 Capsicum annuum HOM05D033747 ORTHO05D033984 3.8e-10 69.7 251 36.3
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 3.8e-10 69.7 253 29.2
Gohir.D05G382950 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.4e-10 68.9 118 45.8
Ciclev10016749m.g Citrus clementina HOM05D008806 ORTHO05D003654 8.4e-10 68.6 255 31.4
Cc09_g00530 Coffea canephora HOM05D005871 ORTHO05D003654 1.9e-09 67.4 246 31.3
Gorai.009G449500 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.9e-09 67.4 129 44.2
Nn1g07488 Nelumbo nucifera HOM05D005871 ORTHO05D003654 2.4e-09 67.0 257 32.7
CANSAT11G0434 Cannabis sativa HOM05D005871 ORTHO05D003654 3.2e-09 66.6 259 33.2
FvH4_6g40700 Fragaria vesca HOM05D008806 ORTHO05D003654 4.2e-09 66.2 238 36.1
Glyma.09G012800 Glycine max HOM05D005871 ORTHO05D003654 4.2e-09 66.2 248 30.2
QL08p028006 Quercus lobata HOM05D008806 ORTHO05D003654 4.2e-09 66.2 261 36.4
QL06p003419 Quercus lobata HOM05D008806 ORTHO05D003654 5.5e-09 65.9 254 32.7
arahy.Tifrunner.gnm1.ann1.5G685G Arachis hypogaea HOM05D005871 ORTHO05D003654 9.3e-09 65.1 247 32.4
Cfa014230 Carpinus fangiana HOM05D008806 ORTHO05D003654 9.3e-09 65.1 257 33.5
Glyma.17G006900 Glycine max HOM05D005871 ORTHO05D003654 9.3e-09 65.1 245 28.6
Cfa000051 Carpinus fangiana HOM05D005871 ORTHO05D003654 1.2e-08 64.7 263 35.0
Migut.M01661 Erythranthe guttata HOM05D018445 ORTHO05D021546 1.2e-08 64.7 236 32.6
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 1.6e-08 64.3 246 29.3
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 2.7e-08 63.5 247 29.1
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 2.7e-08 63.5 247 29.1
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 2.7e-08 63.5 247 29.1
Duzib138G0120 Durio zibethinus HOM05D008806 ORTHO05D003654 4.6e-08 62.8 263 32.3
Prupe.3G198500 Prunus persica HOM05D008806 ORTHO05D003654 6.0e-08 62.4 261 29.9
Eucgr.L00169 Eucalyptus grandis HOM05D005871 ORTHO05D003654 7.9e-08 62.0 284 26.4
FAN09G0572 Fragaria x ananassa HOM05D008806 ORTHO05D003654 3.0e-07 60.1 215 29.8
Ah.06g181330 Amaranthus hybridus HOM05D005871 ORTHO05D003654 3.9e-07 59.7 270 31.5
Cfa017914 Carpinus fangiana HOM05D000074 ORTHO05D000220 3.9e-07 59.7 98 43.9
Psat1g173400 Pisum sativum HOM05D005871 ORTHO05D003654 5.1e-07 59.3 249 28.5
Sc05g0009780 Simmondsia chinensis HOM05D005871 ORTHO05D003654 5.1e-07 59.3 255 31.8
Atru.chr6.3383_Atru.chr6.3384 Acer truncatum HOM05D008806 ORTHO05D003654 6.7e-07 58.9 262 28.6
MSTRG.13016 Avicennia marina HOM05D018445 ORTHO05D021546 6.7e-07 58.9 252 34.1
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 6.7e-07 58.9 248 29.8
SGA_v2.0_scaffold73G24498 Striga asiatica HOM05D016037 ORTHO05D003654 6.7e-07 58.9 247 30.8
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 8.7e-07 58.5 246 28.9
Carub.0003s1247 Capsella rubella HOM05D010616 ORTHO05D003654 1.1e-06 58.2 257 30.7
DCAR_022606 Daucus carota HOM05D005871 ORTHO05D003654 1.9e-06 57.4 286 32.5
FAN05G0544 Fragaria x ananassa HOM05D008806 ORTHO05D003654 1.9e-06 57.4 218 29.8
arahy.Tifrunner.gnm1.ann1.C2C6BR Arachis hypogaea HOM05D005871 ORTHO05D003654 4.3e-06 56.2 271 34.3
CARHR087720 Cardamine hirsuta HOM05D010616 ORTHO05D003654 4.3e-06 56.2 245 30.6
Haze_12634 Corylus avellana HOM05D008806 ORTHO05D003654 4.3e-06 56.2 256 35.2
PSO675G2590 Papaver somniferum HOM05D063809 ORTHO05D003654 4.3e-06 56.2 266 33.8
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 5.6e-06 55.8 250 28.0
Haze_07001 Corylus avellana HOM05D005871 ORTHO05D003654 5.6e-06 55.8 263 34.6
Gohir.A07G191600 Gossypium hirsutum HOM05D008806 ORTHO05D003654 5.6e-06 55.8 247 32.8
arahy.Tifrunner.gnm1.ann1.56XTAU Arachis hypogaea HOM05D005871 ORTHO05D003654 7.4e-06 55.5 33 81.8
Oeu057093.1 Olea europaea HOM05D018445 ORTHO05D021546 7.4e-06 55.5 210 35.7
PGR004G2708 Punica granatum HOM05D005871 ORTHO05D003654 7.4e-06 55.5 212 29.7
Sabra14G0126900 Salix brachista HOM05D008806 ORTHO05D003654 7.4e-06 55.5 255 28.2
Lj6g0012820 Lotus japonicus HOM05D005871 ORTHO05D003654 9.6e-06 55.1 161 31.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 9.6e-06 55.1 33 84.8
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 9.6e-06 55.1 253 35.6


User provided reference genes

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