Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 2.9e-177 625.2 327 100.0
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 5.0e-153 544.7 327 85.9
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 6.3e-140 501.1 328 78.4
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 5.3e-139 498.0 328 78.4
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.7e-127 458.4 334 72.5
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.4e-126 456.8 330 71.8
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.3e-126 456.1 334 71.0
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 2.6e-125 452.6 334 71.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 5.7e-125 451.4 332 70.8
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 3.2e-123 445.7 331 68.9
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 7.0e-123 444.5 328 67.4
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 9.2e-123 444.1 333 69.4
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 7.8e-122 441.0 333 69.4
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 5.6e-120 434.9 334 68.0
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.8e-119 432.6 333 67.0
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 7.5e-117 424.5 329 67.5
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 9.8e-117 424.1 334 66.8
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.9e-116 422.5 333 67.0
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.1e-115 420.6 332 67.2
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.4e-115 420.2 330 65.2
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.4e-115 420.2 328 68.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.4e-115 419.5 333 66.4
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 4.1e-115 418.7 334 65.9
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.4e-115 418.3 331 66.2
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 5.4e-115 418.3 334 65.6
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 9.2e-115 417.5 328 66.2
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.6e-114 415.2 333 65.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 3.0e-113 412.5 334 64.7
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.0e-113 411.8 328 65.9
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.5e-112 409.5 339 64.3
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.5e-112 409.5 335 65.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 5.6e-112 408.3 334 64.7
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 5.6e-112 408.3 335 64.8
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 7.3e-112 407.9 334 64.7
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.2e-111 407.1 333 65.2
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.1e-111 406.4 335 64.2
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.8e-111 406.0 334 64.1
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 6.2e-111 404.8 333 63.4
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 8.0e-111 404.4 334 63.2
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 8.0e-111 404.4 330 64.5
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.4e-110 403.7 339 64.0
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 6.8e-110 401.4 331 63.7
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.2e-109 400.6 326 66.0
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.2e-109 400.6 328 65.2
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.5e-109 400.2 335 63.9
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.4e-109 398.7 334 63.8
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 5.8e-109 398.3 334 62.6
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.3e-108 397.1 392 55.9
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 3.2e-107 392.5 339 62.8
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 9.2e-107 391.0 332 62.7
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.6e-106 390.2 342 62.0
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.7e-106 389.4 333 63.1
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.0e-105 387.5 331 64.4
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.1e-105 385.2 333 62.5
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.9e-104 383.3 278 68.7
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.5e-104 382.9 280 68.9
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 9.5e-104 380.9 280 67.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.1e-103 379.8 340 59.7
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.8e-103 379.4 327 62.7
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.8e-103 379.4 340 58.2
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.7e-103 378.6 336 61.6
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 4.7e-103 378.6 340 60.9
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.1e-102 377.5 372 57.8
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.4e-102 377.1 333 61.6
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 4.0e-102 375.6 338 62.1
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 6.8e-102 374.8 332 61.4
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 6.8e-102 374.8 332 61.4
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 6.8e-102 374.8 332 61.4
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 8.9e-102 374.4 330 59.1
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 2.0e-101 373.2 330 60.0
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.6e-101 372.9 331 61.6
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.4e-101 372.5 330 60.0
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 3.4e-101 372.5 362 59.4
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 4.9e-100 368.6 334 62.3
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 7.1e-99 364.8 333 58.0
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.2e-98 364.0 334 58.1
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.6e-98 363.6 333 57.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.6e-98 362.1 333 58.0
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.0e-97 360.9 277 64.6
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.9e-97 359.0 338 57.4
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 5.1e-97 358.6 328 58.5
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 5.1e-97 358.6 344 54.9
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 6.6e-97 358.2 332 58.7
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 6.6e-97 358.2 332 58.7
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 8.6e-97 357.8 328 60.1
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 8.6e-97 357.8 336 56.5
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.1e-96 357.5 316 58.2
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.9e-96 356.7 337 58.8
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.9e-96 356.7 329 56.8
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.5e-96 356.3 333 57.4
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.3e-96 355.9 375 54.7
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 3.3e-96 355.9 334 58.7
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.3e-96 355.9 332 58.7
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 4.3e-96 355.5 331 58.3
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 7.3e-96 354.8 330 57.9
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.6e-95 353.6 331 58.9
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.1e-95 353.2 335 57.6
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 6.2e-95 351.7 336 57.4
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 4.0e-94 349.0 248 73.8
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 5.2e-94 348.6 330 57.6
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 3.8e-92 342.4 328 57.0
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 3.8e-92 342.4 336 57.4
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 6.4e-92 341.7 338 57.1
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 4.2e-91 339.0 342 55.0
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.4e-91 338.6 341 54.8
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.0e-89 334.3 322 56.5
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-89 334.0 341 54.3
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.7e-89 333.6 338 56.2
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.3e-89 333.2 332 55.1
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.0e-89 332.8 341 54.0
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 3.0e-89 332.8 350 54.6
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 8.7e-89 331.3 331 55.9
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.9e-88 330.1 333 53.8
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 2.5e-88 329.7 322 55.9
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 3.6e-87 325.9 339 55.2
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.6e-87 325.9 329 55.9
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.6e-87 325.9 328 53.4
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 4.8e-87 325.5 336 53.9
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 2.4e-86 323.2 339 54.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-85 320.9 330 52.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.6e-85 319.7 308 57.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 9.9e-85 317.8 329 54.4
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 6.4e-84 315.1 325 54.2
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 6.4e-84 315.1 368 51.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 6.4e-84 315.1 336 55.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 5.4e-83 312.0 221 70.6
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.7e-81 307.0 246 66.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 8.1e-79 298.1 330 53.0
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 4.0e-78 295.8 278 57.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 5.8e-77 292.0 244 60.7
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 7.6e-77 291.6 297 55.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 4.9e-76 288.9 327 51.7
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.5e-74 282.7 317 53.6
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.5e-72 277.3 334 52.4
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.3e-71 274.2 233 62.7
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 3.8e-68 262.7 304 52.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 4.6e-66 255.8 323 49.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 4.3e-64 249.2 260 54.2
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.9e-60 236.5 165 72.1
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-57 227.6 182 65.4
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 8.7e-57 224.9 220 59.5
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-56 224.6 204 63.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.7e-56 222.2 203 61.6
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.4e-56 221.9 203 62.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.8e-55 219.9 164 66.5
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.1e-54 216.5 326 43.3
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 9.0e-54 214.9 234 50.4
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 9.0e-54 214.9 327 42.2
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-53 214.2 175 66.3
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.0e-49 201.4 329 41.9
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 5.1e-49 199.1 234 48.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.5e-44 182.2 173 61.8
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.2e-43 178.7 148 59.5
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.7e-40 169.1 128 64.8
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.0e-37 160.6 209 46.9
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.0e-36 158.3 136 57.4
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-36 157.9 134 62.7
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.0e-36 156.0 155 56.1
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 8.5e-36 155.2 199 48.7
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.0e-33 148.3 140 55.0
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.8e-31 140.2 127 55.9
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.8e-25 120.9 98 61.2
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.4e-24 116.7 104 54.8
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 7.0e-22 109.0 219 35.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 7.5e-16 89.0 90 52.2
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 7.0e-14 82.4 142 35.2
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.6e-13 81.3 307 28.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 5.9e-13 79.3 242 28.5
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.0e-12 78.6 59 66.1
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.3e-12 78.2 60 66.7
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-07 61.6 54 61.1


User provided reference genes

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