Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.7e-64 248.1 126 100.0
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.9e-39 166.0 126 74.6
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.2e-32 142.5 126 63.5
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 5.1e-29 131.3 126 57.9
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 4.3e-28 128.3 126 57.9
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 9.6e-28 127.1 126 59.5
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.6e-27 125.2 126 55.6
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 8.1e-27 124.0 126 58.7
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.8e-26 122.9 127 55.1
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 2.0e-25 119.4 126 57.9
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-25 118.6 125 57.6
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-25 118.6 125 57.6
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.7e-24 116.3 126 58.7
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.4e-24 114.4 127 55.1
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.4e-23 111.3 126 57.9
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.0e-21 107.1 129 52.7
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.0e-21 105.5 126 54.0
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.0e-21 105.5 126 54.0
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.9e-21 105.1 109 54.1
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 2.5e-20 102.4 126 48.4
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 4.3e-20 101.7 126 46.8
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 2.8e-19 99.0 126 46.8
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.6e-19 98.6 128 46.1
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 8.1e-19 97.4 128 45.3
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.4e-18 96.7 127 46.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 1.2e-17 93.6 127 44.9
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-17 93.2 128 45.3
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.6e-17 92.4 130 46.2
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 7.6e-17 90.9 136 45.6
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 9.9e-17 90.5 136 49.3
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 9.9e-17 90.5 127 46.5
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.3e-16 90.1 129 42.6
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.9e-16 89.0 137 44.5
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 3.8e-16 88.6 138 44.2
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.1e-15 87.0 128 48.4
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.9e-15 86.3 139 43.9
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.4e-15 85.9 130 44.6
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 5.4e-15 84.7 129 41.1
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 7.1e-15 84.3 114 50.0
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 1.2e-14 83.6 126 39.7
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 2.7e-14 82.4 134 44.8
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.7e-14 82.4 128 42.2
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 3.5e-14 82.0 138 41.3
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 4.6e-14 81.6 143 42.7
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 4.6e-14 81.6 136 41.9
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.0e-14 81.3 128 40.6
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.0e-14 81.3 128 40.6
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 6.0e-14 81.3 130 46.2
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.0e-13 80.5 139 40.3
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.0e-13 80.5 136 47.1
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 1.0e-13 80.5 132 41.7
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 1.7e-13 79.7 148 44.6
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 6.6e-13 77.8 129 45.7
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.6e-13 77.8 137 40.9
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 6.6e-13 77.8 134 37.3
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 8.7e-13 77.4 132 44.7
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 8.7e-13 77.4 129 41.1
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 8.7e-13 77.4 142 43.7
Gorai.002G096900 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.5e-12 76.6 96 51.0
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 2.5e-12 75.9 145 42.8
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 3.3e-12 75.5 129 40.3
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 3.3e-12 75.5 136 41.9
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 3.3e-12 75.5 149 42.3
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.4e-12 74.3 127 37.8
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.4e-12 74.3 127 37.8
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.3e-11 73.6 129 38.8
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.6e-11 73.2 142 39.4
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 2.1e-11 72.8 139 38.1
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 2.8e-11 72.4 140 39.3
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 3.6e-11 72.0 122 43.4
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.6e-11 72.0 137 40.9
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.8e-11 71.6 136 43.4
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.8e-11 71.6 154 39.6
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 4.8e-11 71.6 140 40.7
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.1e-10 70.5 122 42.6
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-10 70.5 122 42.6
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-10 70.5 128 40.6
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-10 70.5 122 42.6
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-10 70.5 122 42.6
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.1e-10 70.5 141 39.0
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.8e-10 69.7 128 39.1
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.4e-10 69.3 140 38.6
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 3.1e-10 68.9 121 43.0
CAN.G294.21 Capsicum annuum HOM05D004793 ORTHO05D004423 4.0e-10 68.6 134 39.6
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.0e-10 68.6 73 54.8
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.0e-10 68.6 73 54.8
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 6.9e-10 67.8 138 40.6
ECA234G3783 Erigeron canadensis HOM05D004793 ORTHO05D004423 9.0e-10 67.4 158 34.8
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 1.5e-09 66.6 132 40.9
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 1.5e-09 66.6 155 36.8
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 1.5e-09 66.6 153 37.9
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.5e-09 66.6 126 38.1
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.0e-09 66.2 141 36.2
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 2.6e-09 65.9 129 37.2
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.6e-09 65.9 145 38.6
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 3.4e-09 65.5 136 39.0
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.5e-09 65.1 133 39.8
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 4.5e-09 65.1 126 38.1
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 4.5e-09 65.1 129 41.1
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 5.8e-09 64.7 131 38.2
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.8e-09 64.7 73 52.1
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 7.6e-09 64.3 150 34.0
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 7.6e-09 64.3 150 38.7
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 9.9e-09 63.9 137 39.4
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.7e-08 63.2 127 39.4
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.7e-08 63.2 162 37.0
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.7e-08 63.2 132 38.6
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 2.2e-08 62.8 132 41.7
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 2.2e-08 62.8 133 38.3
Sopen07g024260 Solanum pennellii HOM05D037802 ORTHO05D004423 2.9e-08 62.4 117 44.4
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 3.8e-08 62.0 135 38.5
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 4.9e-08 61.6 137 38.0
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 4.9e-08 61.6 138 39.9
Lsat_1_v5_gn_5_121620 Lactuca sativa HOM05D004793 ORTHO05D004423 6.4e-08 61.2 133 38.3
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 6.4e-08 61.2 126 38.9
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 6.4e-08 61.2 126 38.9
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 6.4e-08 61.2 150 36.0
Solyc07g047827.1 Solanum lycopersicum HOM05D037802 ORTHO05D004423 6.4e-08 61.2 117 45.3
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 8.4e-08 60.8 134 37.3
HPP92_012227 Vanilla planifolia HOM05D004793 ORTHO05D004423 8.4e-08 60.8 126 36.5
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 1.1e-07 60.5 132 37.9
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 1.1e-07 60.5 128 37.5
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 1.1e-07 60.5 128 37.5
HPP92_023588 Vanilla planifolia HOM05D020977 ORTHO05D004423 1.1e-07 60.5 130 35.4
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 1.1e-07 60.5 142 33.8
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.9e-07 59.7 136 36.0
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.9e-07 59.7 137 35.0
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 3.2e-07 58.9 131 35.1
CAN.G1397.7 Capsicum annuum HOM05D037802 ORTHO05D004423 4.2e-07 58.5 139 41.0
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 5.5e-07 58.2 85 45.9
CDE04G0094 Ceratophyllum demersum HOM05D004793 ORTHO05D004423 5.5e-07 58.2 125 36.0
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 5.5e-07 58.2 137 34.3
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 7.1e-07 57.8 151 34.4
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 7.1e-07 57.8 94 47.9
CDE04G1256 Ceratophyllum demersum HOM05D000020 ORTHO05D000156 9.3e-07 57.4 68 47.1
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 9.3e-07 57.4 138 36.2
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 1.2e-06 57.0 158 36.1
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.6e-06 56.6 131 36.6
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 2.1e-06 56.2 125 39.2
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 2.7e-06 55.8 157 37.6
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.7e-06 55.8 138 37.7
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 3.5e-06 55.5 124 37.9
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 4.6e-06 55.1 84 46.4
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 4.6e-06 55.1 48 62.5
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 6.0e-06 54.7 128 39.1
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 7.9e-06 54.3 124 35.5


User provided reference genes

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