Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.4e-27 125.6 63 100.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 6.0e-23 110.2 62 87.1
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.3e-20 102.4 58 84.5
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.8e-20 101.3 58 81.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.7e-20 100.9 58 79.3
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.8e-20 100.5 58 82.8
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.1e-19 99.4 58 79.3
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.4e-19 99.0 58 84.5
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 5.3e-19 97.1 55 83.6
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.5e-18 95.5 61 77.0
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 1.0e-17 92.8 58 72.4
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.0e-17 92.8 58 69.0
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.3e-17 92.4 62 71.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 1.7e-17 92.0 58 77.6
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.8e-17 90.9 58 77.6
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 3.8e-17 90.9 58 72.4
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 6.5e-17 90.1 58 77.6
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.1e-16 89.4 58 74.1
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.4e-16 89.0 58 75.9
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.4e-16 89.0 58 70.7
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.9e-16 88.6 59 71.2
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.9e-16 88.6 59 71.2
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-16 88.2 59 71.2
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-16 88.2 59 71.2
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 2.5e-16 88.2 59 71.2
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 2.5e-16 88.2 59 71.2
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.2e-16 87.8 58 72.4
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.2e-16 87.8 59 69.5
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 4.2e-16 87.4 58 70.7
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 5.5e-16 87.0 59 71.2
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 5.5e-16 87.0 59 69.5
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 7.2e-16 86.7 59 71.2
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 7.2e-16 86.7 59 71.2
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 7.2e-16 86.7 62 64.5
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 9.3e-16 86.3 59 69.5
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 9.3e-16 86.3 58 70.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.2e-15 85.9 57 71.9
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.2e-15 85.9 58 69.0
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.2e-15 85.9 58 69.0
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.2e-15 85.9 58 69.0
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.6e-15 85.5 58 69.0
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.1e-15 85.1 58 63.8
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 2.7e-15 84.7 59 69.5
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 2.7e-15 84.7 59 69.5
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 2.7e-15 84.7 50 78.0
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 4.6e-15 84.0 58 65.5
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 7.9e-15 83.2 58 63.8
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 1.0e-14 82.8 58 63.8
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 1.0e-14 82.8 58 63.8
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 1.0e-14 82.8 58 63.8
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 1.3e-14 82.4 58 62.1
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.8e-14 82.0 58 63.8
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.8e-14 82.0 58 65.5
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 3.9e-14 80.9 50 74.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 8.7e-14 79.7 58 63.8
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 1.5e-13 79.0 45 84.4
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.9e-13 78.6 58 63.8
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.9e-13 78.6 58 63.8
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 2.5e-13 78.2 58 60.3
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 2.5e-13 78.2 65 61.5
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.3e-13 77.8 53 66.0
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 5.7e-13 77.0 54 61.1
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 9.7e-13 76.3 58 65.5
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 2.2e-12 75.1 58 62.1
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 4.8e-12 73.9 57 63.2
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 8.2e-12 73.2 57 57.9
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 1.8e-11 72.0 58 55.2
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 3.1e-11 71.2 58 56.9
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.1e-11 70.9 53 62.3
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 4.1e-11 70.9 58 58.6
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 4.1e-11 70.9 58 56.9
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.3e-11 70.5 53 64.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 5.3e-11 70.5 53 64.2
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.2e-10 69.3 53 58.5
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.2e-10 69.3 56 58.9
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.2e-10 69.3 58 60.3
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.5e-10 68.9 57 56.1
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 3.4e-10 67.8 55 56.4
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 4.5e-10 67.4 53 60.4
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 5.9e-10 67.0 46 67.4
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 56.6
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 1.7e-09 65.5 58 58.6
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.7e-09 65.5 57 54.4
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 1.7e-09 65.5 62 56.5
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 2.9e-09 64.7 55 54.5
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 2.9e-09 64.7 55 54.5
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.8e-09 64.3 55 54.5
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 5.0e-09 63.9 55 54.5
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 5.0e-09 63.9 55 54.5
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 58.5
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 5.0e-09 63.9 57 57.9
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 6.5e-09 63.5 58 50.0
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 6.5e-09 63.5 53 56.6
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 8.5e-09 63.2 55 52.7
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 8.5e-09 63.2 53 58.5
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 54.7
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 50.9
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 50.9
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 52.8
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 9.4e-08 59.7 55 54.5
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 1.2e-07 59.3 41 68.3
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.6e-07 58.9 58 48.3
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 1.6e-07 58.9 57 49.1
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 2.1e-07 58.5 43 65.1
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.7e-07 58.2 53 50.9
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 7.9e-07 56.6 58 50.0
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 2.3e-06 55.1 54 44.4
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 2.3e-06 55.1 47 55.3
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 5.1e-06 53.9 54 40.7


User provided reference genes

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