Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 2.8e-168 595.1 288 100.0
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 9.5e-124 447.2 287 77.7
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 2.8e-123 445.7 285 72.6
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.3e-120 436.8 284 75.4
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 7.1e-119 431.0 286 72.7
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.2e-118 430.3 286 72.7
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 2.7e-118 429.1 286 72.4
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.3e-117 426.8 283 70.3
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.7e-117 426.4 285 71.2
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 2.3e-117 426.0 286 71.3
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 3.0e-117 425.6 285 71.6
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 6.6e-117 424.5 287 72.1
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.3e-116 421.8 286 70.3
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 4.3e-116 421.8 285 69.8
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 9.6e-116 420.6 285 71.9
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 3.6e-115 418.7 282 70.9
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 8.1e-115 417.5 285 69.5
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 2.4e-114 416.0 281 71.5
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 3.1e-114 415.6 286 69.9
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 5.2e-114 414.8 279 72.0
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 4.4e-113 411.8 274 70.1
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 4.4e-113 411.8 283 70.7
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 3.8e-112 408.7 311 65.3
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 8.4e-112 407.5 255 76.1
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.9e-111 406.4 276 69.2
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 3.2e-111 405.6 283 68.9
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 5.4e-111 404.8 286 67.5
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.2e-110 403.7 285 66.0
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.7e-109 399.8 286 67.1
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.7e-109 399.8 287 67.9
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 6.6e-109 397.9 286 66.4
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.9e-108 396.4 287 67.9
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 5.6e-108 394.8 264 70.8
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 9.6e-108 394.0 292 66.4
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 9.6e-108 394.0 263 69.6
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 2.1e-107 392.9 283 67.8
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.1e-107 392.9 275 68.0
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 3.6e-107 392.1 288 67.7
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 8.1e-107 391.0 289 66.1
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.8e-106 389.8 288 65.3
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 2.4e-106 389.4 263 70.3
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 4.0e-106 388.7 286 65.0
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 9.0e-106 387.5 262 70.6
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 9.0e-106 387.5 283 65.7
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 2.0e-105 386.3 283 64.3
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 4.4e-105 385.2 292 64.7
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 5.8e-105 384.8 215 84.2
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 5.8e-105 384.8 278 65.1
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 1.7e-104 383.3 262 72.1
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 6.4e-104 381.3 221 79.6
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.2e-102 377.1 240 74.2
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 2.7e-102 375.9 245 71.0
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 3.5e-102 375.6 261 69.7
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 3.5e-102 375.6 241 72.2
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 6.0e-102 374.8 264 66.7
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.3e-101 373.6 238 73.1
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 2.5e-100 369.4 315 57.1
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 9.6e-100 367.5 225 75.6
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 3.6e-99 365.5 283 60.8
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 6.2e-99 364.8 249 68.3
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 6.2e-99 364.8 288 62.5
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 1.4e-98 363.6 250 67.6
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 5.3e-98 361.7 245 71.0
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 6.9e-98 361.3 215 77.7
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 9.0e-98 360.9 237 71.7
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.0e-97 359.8 291 60.5
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 3.4e-97 359.0 286 61.2
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 4.5e-97 358.6 218 72.9
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 9.9e-97 357.5 254 66.5
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 1.3e-96 357.1 283 62.5
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.2e-96 356.3 286 62.2
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 8.4e-96 354.4 240 68.8
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.4e-95 353.6 231 71.0
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.9e-95 353.2 284 62.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 7.1e-95 351.3 221 73.3
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 7.1e-95 351.3 225 73.3
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 2.1e-94 349.7 284 60.2
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 2.1e-94 349.7 284 60.2
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 2.1e-94 349.7 284 60.2
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 7.9e-94 347.8 225 71.1
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 6.7e-93 344.7 215 72.6
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.5e-92 343.6 221 69.2
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 3.3e-92 342.4 269 61.0
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.6e-91 340.1 235 70.2
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.6e-91 340.1 303 57.4
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 1.7e-88 330.1 225 69.3
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 1.9e-87 326.6 216 67.6
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 7.9e-86 321.2 242 64.0
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 6.7e-85 318.2 264 62.1
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 3.3e-84 315.8 192 75.0
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 1.3e-83 313.9 242 63.6
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 2.0e-81 306.6 243 62.1
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 7.6e-81 304.7 173 82.1
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 1.3e-80 303.9 288 55.9
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.7e-80 303.5 186 74.7
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 3.2e-79 299.3 243 61.7
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 9.3e-79 297.7 175 78.9
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.3e-77 293.9 218 61.0
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.0e-73 280.0 199 65.8
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.4e-73 279.3 173 72.3
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 3.1e-66 256.1 164 75.6
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 5.7e-60 235.3 173 63.6
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.9e-55 220.3 221 47.1
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 3.6e-54 216.1 221 46.2
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 3.7e-51 206.1 184 59.2
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.2e-49 201.1 150 64.7
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.0e-49 200.3 225 44.4
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.7e-49 199.9 176 59.7
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 5.0e-48 195.7 225 47.1
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.2e-47 193.0 114 77.2
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 9.4e-47 191.4 114 76.3
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.1e-42 177.9 218 42.2
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 4.5e-41 172.6 103 77.7
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 2.5e-39 166.8 121 69.4
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 4.2e-39 166.0 97 80.4
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 3.4e-36 156.4 106 70.8
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-30 137.1 135 57.0
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-30 137.1 135 57.0
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 4.7e-30 136.0 105 63.8
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 5.9e-25 119.0 156 46.8
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.3e-24 117.9 79 69.6
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.2e-20 104.8 61 78.7
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.6e-17 92.8 56 76.8
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 4.6e-17 92.8 123 47.2
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 5.6e-15 85.9 122 44.3
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.6e-14 83.2 50 76.0
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 6.2e-14 82.4 112 46.4
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 6.2e-14 82.4 112 46.4
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 2.2e-11 73.9 92 45.7
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 5.1e-08 62.8 48 60.4
VMungo1383G1640 Vigna mungo HOM05D000450 ORTHO05D000327 2.5e-07 60.5 194 30.4
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 4.3e-07 59.7 179 28.5
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 7.3e-07 58.9 36 75.0
CANSAT25G1010 Cannabis sativa HOM05D000450 ORTHO05D000327 1.2e-06 58.2 188 28.7
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 8.1e-06 55.5 35 68.6


User provided reference genes

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