Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 4.8e-64 248.1 124 100.0
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 7.3e-44 181.0 124 74.2
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 2.5e-36 156.0 125 64.8
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 2.5e-36 156.0 125 64.8
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 1.2e-35 153.7 124 66.9
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.6e-35 153.3 125 63.2
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 3.6e-35 152.1 124 62.1
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 4.9e-32 141.7 128 57.8
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 1.6e-27 126.7 127 55.1
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 2.1e-27 126.3 125 53.6
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.7e-27 125.2 127 54.3
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.1e-27 124.4 127 54.3
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.1e-27 124.4 127 54.3
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.8e-26 123.2 127 54.3
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 4.0e-26 122.1 124 50.0
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 5.2e-26 121.7 127 54.3
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 5.2e-26 121.7 127 54.3
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 1.5e-25 120.2 124 50.0
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 2.0e-25 119.8 121 52.9
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 3.4e-25 119.0 126 52.4
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 9.9e-25 117.5 124 50.0
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 1.3e-24 117.1 125 52.8
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 2.9e-24 115.9 127 51.2
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 4.9e-24 115.2 127 50.4
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 8.3e-24 114.4 124 52.4
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 8.3e-24 114.4 133 49.6
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 1.4e-23 113.6 126 53.2
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 1.9e-23 113.2 126 54.0
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 1.9e-23 113.2 129 49.6
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 2.4e-23 112.8 121 49.6
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 5.4e-23 111.7 124 49.2
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 5.4e-23 111.7 125 50.4
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 1.2e-22 110.5 61 80.3
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 1.6e-22 110.2 125 48.0
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 2.7e-22 109.4 134 52.2
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 4.6e-22 108.6 121 52.1
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 4.6e-22 108.6 127 48.0
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 6.0e-22 108.2 124 46.0
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 7.8e-22 107.8 119 48.7
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 7.8e-22 107.8 125 46.4
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 1.3e-21 107.1 122 47.5
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 1.7e-21 106.7 127 48.8
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 2.3e-21 106.3 127 48.8
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 3.0e-21 105.9 124 48.4
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 5.1e-21 105.1 127 47.2
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 8.6e-21 104.4 122 48.4
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 1.5e-20 103.6 126 47.6
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 2.5e-20 102.8 67 71.6
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 9.5e-20 100.9 112 46.4
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 1.2e-19 100.5 64 70.3
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 1.6e-19 100.1 88 54.5
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 1.6e-19 100.1 120 50.0
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 2.1e-19 99.8 128 46.9
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 2.8e-19 99.4 63 69.8
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 6.2e-19 98.2 119 45.4
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 6.2e-19 98.2 125 44.8
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 8.1e-19 97.8 126 45.2
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.1e-18 97.4 125 44.8
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 1.1e-18 97.4 92 55.4
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.4e-18 97.1 116 47.4
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.8e-18 96.7 127 41.7
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 3.1e-18 95.9 128 46.9
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 3.1e-18 95.9 125 41.6
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 5.2e-18 95.1 131 44.3
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 8.9e-18 94.4 118 43.2
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.2e-17 94.0 133 42.9
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 1.5e-17 93.6 139 43.9
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 1.5e-17 93.6 127 44.1
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 2.6e-17 92.8 124 41.1
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 4.4e-17 92.0 125 43.2
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 4.4e-17 92.0 63 71.4
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 5.8e-17 91.7 63 65.1
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 9.9e-17 90.9 127 42.5
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 1.7e-16 90.1 63 69.8
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.7e-16 90.1 78 55.1
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 2.2e-16 89.7 141 41.1
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 2.9e-16 89.4 137 41.6
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 2.9e-16 89.4 63 66.7
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.9e-16 89.4 63 69.8
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 8.4e-16 87.8 85 55.3
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 8.4e-16 87.8 62 67.7
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 8.4e-16 87.8 133 42.1
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.4e-15 86.3 71 60.6
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 3.2e-15 85.9 85 54.1
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.2e-15 85.9 68 61.8
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 5.4e-15 85.1 71 59.2
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 5.4e-15 85.1 116 41.4
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 7.1e-15 84.7 111 45.9
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 9.2e-15 84.3 125 42.4
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 9.2e-15 84.3 133 39.8
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.2e-14 84.0 70 54.3
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 1.2e-14 84.0 123 42.3
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 1.2e-14 84.0 134 41.0
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 2.7e-14 82.8 68 60.3
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 2.7e-14 82.8 68 60.3
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 2.7e-14 82.8 134 41.8
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 4.6e-14 82.0 129 38.8
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.6e-14 82.0 78 51.3
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.3e-13 80.5 130 38.5
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 1.7e-13 80.1 73 60.3
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 1.7e-13 80.1 73 60.3
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.7e-13 80.1 86 55.8
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.3e-13 79.7 123 40.7
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 2.3e-13 79.7 68 57.4
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.0e-13 79.3 132 40.2
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 3.9e-13 79.0 128 39.8
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 5.1e-13 78.6 45 80.0
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 6.6e-13 78.2 73 58.9
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 6.6e-13 78.2 135 39.3
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 8.7e-13 77.8 73 58.9
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 1.1e-12 77.4 73 58.9
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 1.1e-12 77.4 67 55.2
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 1.5e-12 77.0 79 48.1
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.5e-12 77.0 129 34.9
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.5e-12 77.0 73 58.9
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 1.9e-12 76.6 122 36.9
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.9e-12 76.6 76 48.7
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 3.3e-12 75.9 73 57.5
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 3.3e-12 75.9 73 57.5
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 3.3e-12 75.9 73 57.5
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 3.3e-12 75.9 73 57.5
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 4.3e-12 75.5 67 52.2
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 4.3e-12 75.5 56 58.9
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 4.3e-12 75.5 67 52.2
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 4.3e-12 75.5 67 52.2
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 4.3e-12 75.5 67 52.2
RhsimUnG0248700 Rhododendron simsii HOM05D004357 ORTHO05D005064 5.6e-12 75.1 133 41.4
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 7.3e-12 74.7 88 46.6
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 7.3e-12 74.7 73 56.2
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 7.3e-12 74.7 73 56.2
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 7.3e-12 74.7 129 34.9
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.6e-11 73.6 70 55.7
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 2.1e-11 73.2 128 36.7
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.1e-11 73.2 73 54.8
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 2.8e-11 72.8 79 46.8
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.8e-11 72.8 125 36.8
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.6e-11 72.4 66 54.5
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 4.7e-11 72.0 130 39.2
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 4.7e-11 72.0 130 39.2
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.7e-11 72.0 129 40.3
arahy.Tifrunner.gnm1.ann1.FD90PG Arachis hypogaea HOM05D004357 ORTHO05D005064 6.2e-11 71.6 113 44.2
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 6.2e-11 71.6 132 35.6
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 8.1e-11 71.2 125 39.2
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 2.4e-10 69.7 131 35.9
arahy.Tifrunner.gnm1.ann1.N0IC2B Arachis hypogaea HOM05D004357 ORTHO05D005064 3.1e-10 69.3 112 43.8
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.1e-10 69.3 132 35.6
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 4.0e-10 68.9 139 38.1
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 6.9e-10 68.2 126 34.9
Gohir.D05G372800 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.2e-09 67.4 117 41.0
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 2.0e-09 66.6 119 37.0
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 2.0e-09 66.6 123 35.0
Gorai.009G441300 Gossypium raimondii HOM05D004357 ORTHO05D005064 2.0e-09 66.6 117 41.0
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 3.4e-09 65.9 127 35.4
SGA_v2.0_scaffold66G22369 Striga asiatica HOM05D004357 ORTHO05D005064 5.8e-09 65.1 67 47.8
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 9.9e-09 64.3 80 45.0
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 9.9e-09 64.3 78 44.9
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 9.9e-09 64.3 82 45.1
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 9.9e-09 64.3 82 45.1
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.7e-08 63.5 125 36.0
Duzib235G1176 Durio zibethinus HOM05D002014 ORTHO05D001958 2.2e-08 63.2 124 33.1
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 4.9e-08 62.0 67 44.8
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 4.9e-08 62.0 67 44.8
Gohir.A04G013400 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.1e-07 60.8 116 39.7
Thecc.06G225500 Theobroma cacao HOM05D002014 ORTHO05D001958 1.4e-07 60.5 124 31.5
TAR624G0852 Trochodendron aralioides HOM05D002014 ORTHO05D001958 1.9e-07 60.1 124 32.3
Migut.J01605 Erythranthe guttata HOM05D004357 ORTHO05D005064 2.4e-07 59.7 65 47.7
Thecc.06G225200 Theobroma cacao HOM05D002014 ORTHO05D001958 4.2e-07 58.9 125 32.8
Duzib235G0981 Durio zibethinus HOM05D002014 ORTHO05D001958 5.4e-07 58.5 116 29.3
PGR042G1145 Punica granatum HOM05D002014 ORTHO05D001958 7.1e-07 58.2 85 36.5
Thecc.06G225300 Theobroma cacao HOM05D002014 ORTHO05D001958 7.1e-07 58.2 126 29.4
Lj6C73T0 Lonicera japonica HOM05D002014 ORTHO05D001958 9.3e-07 57.8 80 38.8
Actinidia26893 Actinidia chinensis HOM05D000131 ORTHO05D000086 3.5e-06 55.8 124 29.8
CsaV3_1G010310 Cucumis sativus L. HOM05D002014 ORTHO05D001958 3.5e-06 55.8 124 31.5
COL.COLO4_31812 Corchorus olitorius HOM05D002014 ORTHO05D001958 7.8e-06 54.7 124 30.6
Lj6g0008980 Lotus japonicus HOM05D002014 ORTHO05D001958 7.8e-06 54.7 78 38.5
Phvul.006G147300 Phaseolus vulgaris HOM05D002014 ORTHO05D001958 7.8e-06 54.7 124 29.8


User provided reference genes

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