Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 6.6e-69 263.8 128 100.0
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 1.7e-35 152.9 129 68.2
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 3.7e-19 98.6 132 50.0
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 6.3e-19 97.8 131 55.7
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 8.2e-19 97.4 134 44.0
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.1e-18 97.1 132 44.7
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 9.1e-18 94.0 136 44.9
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 1.6e-17 93.2 132 50.0
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.0e-17 92.8 124 44.4
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.0e-17 92.8 124 44.4
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 2.6e-17 92.4 137 43.1
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 3.5e-17 92.0 139 47.5
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.5e-17 91.7 139 48.9
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.5e-17 91.7 132 46.2
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.9e-17 91.3 139 48.9
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.9e-16 89.0 139 48.2
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.0e-16 88.2 126 42.1
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 8.5e-16 87.4 139 46.0
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.9e-15 86.3 127 44.1
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 2.5e-15 85.9 126 45.2
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 2.5e-15 85.9 126 45.2
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 2.5e-15 85.9 126 45.2
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 5.5e-15 84.7 114 44.7
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 5.5e-15 84.7 134 38.1
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 5.5e-15 84.7 147 39.5
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 9.4e-15 84.0 119 41.2
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.2e-14 83.6 138 44.9
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 1.2e-14 83.6 113 45.1
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.6e-14 83.2 123 43.9
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 2.1e-14 82.8 112 46.4
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 2.1e-14 82.8 128 43.0
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 4.7e-14 81.6 114 46.5
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 4.7e-14 81.6 145 36.6
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 4.7e-14 81.6 142 44.4
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.0e-13 80.5 117 43.6
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 1.4e-13 80.1 129 46.5
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 1.8e-13 79.7 136 42.6
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 2.3e-13 79.3 132 40.2
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 2.3e-13 79.3 136 41.9
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 3.0e-13 79.0 143 39.2
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 4.0e-13 78.6 114 45.6
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 5.2e-13 78.2 147 42.9
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 5.2e-13 78.2 119 43.7
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.2e-13 78.2 118 44.1
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 5.2e-13 78.2 110 42.7
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 6.8e-13 77.8 134 41.8
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 8.8e-13 77.4 144 38.9
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 1.2e-12 77.0 131 42.7
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.5e-12 76.6 118 42.4
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 2.0e-12 76.3 119 42.0
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 2.0e-12 76.3 128 43.0
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 2.0e-12 76.3 114 43.9
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 2.6e-12 75.9 139 42.4
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 2.6e-12 75.9 128 40.6
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 3.4e-12 75.5 139 43.2
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 3.4e-12 75.5 137 43.1
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.4e-12 75.5 118 43.2
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.4e-12 75.5 118 43.2
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 3.4e-12 75.5 95 45.3
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 4.4e-12 75.1 95 48.4
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 4.4e-12 75.1 115 43.5
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 7.5e-12 74.3 146 43.2
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.3e-11 73.6 105 50.5
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.3e-11 73.6 118 43.2
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.3e-11 73.6 113 42.5
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 1.7e-11 73.2 118 41.5
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 2.8e-11 72.4 110 41.8
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.7e-11 72.0 118 42.4
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.8e-11 71.6 84 44.0
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 4.8e-11 71.6 126 37.3
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 4.8e-11 71.6 110 40.9
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 6.3e-11 71.2 99 43.4
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 1.1e-10 70.5 120 38.3
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 1.4e-10 70.1 106 40.6
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 2.4e-10 69.3 98 40.8
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 2.4e-10 69.3 108 38.0
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.1e-10 68.9 126 37.3
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 3.1e-10 68.9 98 43.9
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 4.1e-10 68.6 113 39.8
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 4.1e-10 68.6 92 46.7
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 4.1e-10 68.6 91 46.2
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 5.4e-10 68.2 101 45.5
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 5.4e-10 68.2 100 40.0
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 5.4e-10 68.2 141 38.3
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.4e-10 68.2 88 42.0
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.4e-10 68.2 84 42.9
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 5.4e-10 68.2 103 44.7
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 7.0e-10 67.8 101 41.6
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 7.0e-10 67.8 101 41.6
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 7.0e-10 67.8 101 40.6
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 9.1e-10 67.4 100 41.0
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.2e-09 67.0 128 37.5
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 1.2e-09 67.0 118 35.6
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 1.2e-09 67.0 139 37.4
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 1.6e-09 66.6 121 39.7
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.6e-09 66.6 121 38.8
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 1.6e-09 66.6 96 41.7
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 1.6e-09 66.6 142 37.3
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 2.0e-09 66.2 105 42.9
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 2.0e-09 66.2 112 39.3
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 2.0e-09 66.2 94 41.5
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 2.0e-09 66.2 101 44.6
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 3.5e-09 65.5 138 40.6
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 7.7e-09 64.3 87 39.1
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.0e-08 63.9 95 40.0
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.3e-08 63.5 109 35.8
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.7e-08 63.2 94 40.4
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.7e-08 63.2 99 39.4
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 3.8e-08 62.0 128 35.9
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 3.8e-08 62.0 83 47.0
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 3.8e-08 62.0 127 35.4
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 6.5e-08 61.2 124 37.9
Medtr8g468960 Medicago truncatula HOM05D011727 ORTHO05D004912 1.1e-07 60.5 95 46.3
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 2.5e-07 59.3 98 40.8
Sopen02g025250 Solanum pennellii HOM05D011575 ORTHO05D004912 4.2e-07 58.5 98 40.8
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.5e-07 58.2 100 39.0
unitig_744.g24521 Utricularia gibba HOM05D011575 ORTHO05D004912 5.5e-07 58.2 110 37.3
PGSC0003DMG400016452 Solanum tuberosum HOM05D011575 ORTHO05D004912 1.2e-06 57.0 98 38.8
Ah.04g165930 Amaranthus hybridus HOM05D007398 ORTHO05D004912 1.6e-06 56.6 111 36.0
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 4.7e-06 55.1 83 41.0
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 6.1e-06 54.7 104 39.4
Solyc02g080550.1 Solanum lycopersicum HOM05D011575 ORTHO05D004912 6.1e-06 54.7 82 43.9
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 6.1e-06 54.7 90 36.7
unitig_0.g942 Utricularia gibba HOM05D011575 ORTHO05D004912 6.1e-06 54.7 84 39.3


User provided reference genes

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