Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 4.3e-92 341.3 169 100.0
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 3.7e-67 258.5 184 69.6
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 1.4e-66 256.5 184 71.2
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 4.1e-66 255.0 175 76.0
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 4.5e-65 251.5 186 69.4
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 5.9e-65 251.1 179 72.6
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 7.7e-65 250.8 184 68.5
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 7.7e-65 250.8 179 70.4
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 1.0e-64 250.4 179 72.6
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 3.8e-64 248.4 183 68.3
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 3.8e-64 248.4 184 70.1
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 6.5e-64 247.7 183 68.3
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 1.9e-63 246.1 184 70.7
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 3.2e-63 245.4 185 70.3
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 5.5e-63 244.6 183 68.9
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.5e-63 244.6 188 67.6
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.5e-63 244.6 188 67.6
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 7.2e-63 244.2 184 68.5
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.2e-62 243.4 185 67.6
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 1.2e-62 243.4 180 70.6
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.2e-62 243.4 180 70.6
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 2.1e-62 242.7 169 70.4
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 3.6e-62 241.9 169 70.4
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 4.7e-62 241.5 179 70.4
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 6.1e-62 241.1 180 69.4
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 8.0e-62 240.7 179 70.9
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 1.0e-61 240.4 169 69.2
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 6.7e-61 237.7 184 67.9
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 8.8e-61 237.3 183 66.1
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 8.8e-61 237.3 185 67.6
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 1.5e-60 236.5 174 67.8
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 2.0e-60 236.1 184 66.8
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 2.6e-60 235.7 184 66.3
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 3.3e-60 235.3 183 63.9
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 5.7e-60 234.6 185 64.9
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 7.4e-60 234.2 187 66.3
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 7.4e-60 234.2 184 64.1
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 9.7e-60 233.8 187 62.0
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 1.7e-59 233.0 186 61.8
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 2.2e-59 232.6 190 65.3
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 2.8e-59 232.3 187 66.3
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 2.8e-59 232.3 185 66.5
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 3.7e-59 231.9 185 64.3
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 4.8e-59 231.5 186 62.4
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 1.4e-58 229.9 189 62.4
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 1.4e-58 229.9 185 65.4
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 1.8e-58 229.6 186 60.2
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 3.1e-58 228.8 186 60.2
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 1.2e-57 226.9 186 62.9
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 1.6e-57 226.5 195 61.0
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 1.6e-57 226.5 186 59.1
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 2.6e-57 225.7 186 59.7
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 5.0e-56 221.5 151 72.2
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 5.0e-56 221.5 185 64.3
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 6.5e-56 221.1 186 59.7
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 6.5e-56 221.1 186 59.7
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 6.5e-56 221.1 140 75.7
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 6.5e-56 221.1 182 62.1
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 8.5e-56 220.7 189 59.8
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.1e-55 220.3 151 71.5
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 4.2e-55 218.4 186 58.6
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 4.2e-55 218.4 188 59.0
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 7.2e-55 217.6 183 60.7
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 7.2e-55 217.6 230 52.6
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.6e-54 216.5 189 56.6
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 3.6e-54 215.3 188 61.2
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 4.7e-54 214.9 188 58.0
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 6.1e-54 214.5 188 62.2
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 8.0e-54 214.2 175 64.6
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 1.0e-53 213.8 193 60.1
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 1.8e-53 213.0 197 54.3
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 2.3e-53 212.6 150 72.0
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 4.0e-53 211.8 170 60.6
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 6.7e-53 211.1 172 62.2
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 6.7e-53 211.1 198 59.6
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 1.5e-52 209.9 200 53.5
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 2.6e-52 209.1 169 65.7
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 3.3e-52 208.8 188 57.4
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 9.7e-52 207.2 183 61.7
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.7e-51 206.5 202 58.4
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 6.3e-51 204.5 153 69.3
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 3.1e-50 202.2 138 71.7
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 5.3e-50 201.4 133 72.9
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 9.1e-50 200.7 138 71.0
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 1.2e-49 200.3 134 69.4
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 1.6e-49 199.9 137 72.3
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 1.7e-48 196.4 225 48.9
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 1.7e-48 196.4 190 58.4
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 1.7e-48 196.4 183 59.0
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 6.5e-48 194.5 137 73.0
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 5.5e-47 191.4 162 59.9
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 2.7e-46 189.1 129 76.0
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 5.2e-45 184.9 218 50.0
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 1.5e-44 183.3 190 55.3
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 1.4e-42 176.8 188 54.8
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 2.4e-42 176.0 161 59.6
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 4.1e-42 175.3 151 57.6
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 4.2e-39 165.2 108 74.1
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 1.2e-38 163.7 184 50.5
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 2.8e-38 162.5 135 65.9
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 1.0e-37 160.6 119 66.4
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 1.1e-34 150.6 169 52.7
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 3.1e-34 149.1 91 78.0
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 5.0e-32 141.7 126 63.5
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.4e-29 133.7 74 79.7
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 2.3e-29 132.9 88 73.9
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 6.4e-27 124.8 165 39.4
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 2.4e-26 122.9 219 38.8
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.3e-24 117.1 122 56.6
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.3e-24 117.1 122 56.6
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 1.4e-21 107.1 165 39.4
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 2.3e-21 106.3 111 57.7
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 1.9e-15 86.7 113 49.6
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 9.2e-10 67.8 69 59.4
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 3.0e-08 62.8 60 46.7
Cre09.g401150 Chlamydomonas reinhardtii HOM05D006936 ORTHO05D008273 2.5e-07 59.7 172 26.7
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 3.3e-07 59.3 111 37.8
vmacro02234 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 2.1e-06 56.6 67 52.2
PRCOL_00006382 Prasinoderma coloniale HOM05D006936 ORTHO05D008273 6.2e-06 55.1 174 30.5


User provided reference genes

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