Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 1.0e-102 376.7 187 100.0
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 1.8e-99 365.9 187 95.7
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 3.1e-99 365.2 187 95.7
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 4.0e-99 364.8 186 95.7
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 9.0e-99 363.6 187 95.2
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.2e-98 363.2 187 94.7
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.2e-98 363.2 187 94.7
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.5e-98 362.8 187 95.2
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.5e-98 362.8 187 94.1
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 94.7
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.6
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 94.1
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.6
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.6
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.6
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 5.8e-98 360.9 187 93.0
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 7.6e-98 360.5 187 94.1
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 7.6e-98 360.5 187 94.1
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 7.6e-98 360.5 187 94.1
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 93.0
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 92.5
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.3e-97 359.8 187 92.0
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.3e-97 359.8 187 92.5
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.3e-97 359.8 187 93.0
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.3e-97 359.8 187 93.0
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 93.6
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 93.6
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 92.0
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 92.5
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 94.1
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 4.9e-97 357.8 182 96.2
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.1e-96 356.7 182 96.2
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 92.5
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 92.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 92.5
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 93.0
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 92.0
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 93.0
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 91.4
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 92.0
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 90.9
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 92.0
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 92.0
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 91.4
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 92.0
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 90.9
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 90.4
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 91.4
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 92.0
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 90.9
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 91.4
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 91.4
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.7e-95 352.1 200 87.5
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 91.4
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 91.4
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.9
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.4
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 6.0e-95 350.9 196 89.8
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 89.8
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 90.9
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.9
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.9
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 91.4
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 89.8
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.4
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 90.9
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 90.4
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.8
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 90.4
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 90.4
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 90.4
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 5.1e-94 347.8 185 91.9
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 89.3
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.3
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 90.4
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 89.3
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 2.5e-93 345.5 186 88.7
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 3.3e-93 345.1 193 88.1
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.3e-93 345.1 183 90.7
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 89.3
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.8
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 1.3e-92 343.2 182 90.1
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.1e-92 342.4 183 88.5
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 88.8
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.7
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 86.6
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 4.8e-92 341.3 186 89.8
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 6.2e-92 340.9 201 84.6
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 86.6
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.6
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.1e-91 340.1 182 88.5
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.1e-91 340.1 185 88.1
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 88.2
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.4e-91 339.0 183 89.1
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.4e-91 339.0 185 87.6
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.3e-91 337.8 206 82.0
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 5.3e-91 337.8 181 90.1
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.2e-90 336.7 182 89.0
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.2e-90 336.7 182 89.0
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 1.2e-90 336.7 206 82.0
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.6e-90 335.5 208 81.2
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 7.6e-90 334.0 203 81.3
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 5.0e-89 331.3 187 85.0
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 8.4e-89 330.5 186 86.0
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.1e-88 330.1 183 88.0
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 4.2e-88 328.2 241 71.0
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 2.1e-87 325.9 187 84.0
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.1e-85 320.1 173 87.3
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.9e-85 319.3 211 76.8
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.8e-84 315.5 167 90.4
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 6.9e-83 310.8 185 78.9
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 3.4e-82 308.5 164 88.4
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.0e-81 304.7 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.0e-81 304.7 187 76.5
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 8.5e-81 303.9 187 77.0
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.6e-79 299.7 187 74.9
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 3.9e-78 295.0 185 81.6
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 6.7e-78 294.3 187 79.7
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.7e-77 291.2 187 78.1
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.7e-77 290.4 172 77.9
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.3e-76 290.0 154 90.9
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 3.7e-76 288.5 187 72.7
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.4e-75 286.6 187 77.5
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 5.3e-75 284.6 180 75.0
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 6.9e-75 284.3 158 88.0
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 9.1e-75 283.9 149 94.0
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-72 276.9 187 74.3
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 6.1e-71 271.2 144 89.6
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 2.3e-70 269.2 187 74.3
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 6.3e-68 261.2 214 60.7
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.5e-66 256.5 158 77.8
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 3.6e-63 245.4 187 69.5
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 3.3e-61 238.8 173 63.0
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 9.7e-61 237.3 187 66.3
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 7.0e-59 231.1 124 90.3
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.0e-54 215.7 133 75.9
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.5e-53 213.4 103 98.1
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 5.4e-51 204.9 167 57.5
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.7e-49 199.9 98 94.9
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 2.9e-49 199.1 175 56.6
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 8.5e-49 197.6 139 71.9
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 7.2e-48 194.5 106 89.6
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.0e-46 188.7 103 85.4
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 9.8e-45 184.1 177 58.2
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 4.1e-43 178.7 98 82.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 5.7e-37 158.3 85 90.6
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 2.8e-31 139.4 142 57.0
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 6.8e-22 108.2 68 73.5
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 7.1e-19 98.2 52 96.2
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 6.0e-18 95.1 52 92.3
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.5e-16 90.5 49 93.9
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.3e-14 83.2 41 95.1
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 2.0e-13 80.1 45 88.9
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.3e-12 77.4 41 85.4
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.9e-12 76.3 70 61.4
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 3.7e-12 75.9 47 78.7
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.1e-11 74.3 39 82.1
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.4e-11 73.9 68 55.9


User provided reference genes

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