Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 3.7e-57 224.6 107 100.0
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 6.2e-28 127.5 100 61.0
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.4e-27 125.6 111 61.3
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 9.0e-27 123.6 115 60.9
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 3.4e-26 121.7 108 61.1
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 9.9e-26 120.2 68 77.9
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.7e-25 119.4 70 77.1
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 8.4e-25 117.1 106 59.4
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 8.4e-25 117.1 105 60.0
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.9e-24 115.9 105 59.0
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 2.4e-24 115.5 101 57.4
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 3.2e-24 115.2 98 60.2
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 4.2e-24 114.8 104 61.5
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 7.1e-24 114.0 64 79.7
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 2.1e-23 112.5 100 61.0
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 2.7e-23 112.1 69 79.7
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.0e-22 110.2 113 54.0
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.0e-22 110.2 113 54.0
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 1.8e-22 109.4 100 60.0
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 1.8e-22 109.4 95 60.0
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.8e-22 109.4 113 54.0
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 2.3e-22 109.0 104 57.7
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 2.3e-22 109.0 69 71.0
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 3.0e-22 108.6 69 73.9
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 8.7e-22 107.1 101 57.4
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 1.1e-21 106.7 106 58.5
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.5e-21 106.3 107 51.4
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 4.3e-21 104.8 70 68.6
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 5.6e-21 104.4 102 55.9
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 7.4e-21 104.0 69 72.5
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 4.8e-20 101.3 92 57.6
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 1.4e-19 99.8 103 54.4
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.8e-19 99.4 98 54.1
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 2.4e-19 99.0 72 66.7
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 4.0e-19 98.2 103 53.4
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 4.0e-19 98.2 103 53.4
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 4.0e-19 98.2 103 53.4
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 9.0e-19 97.1 103 53.4
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 9.0e-19 97.1 103 52.4
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 9.0e-19 97.1 104 51.9
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 1.5e-18 96.3 104 49.0
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 2.6e-18 95.5 106 48.1
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.6e-18 95.5 100 54.0
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 3.4e-18 95.1 109 49.5
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 7.6e-18 94.0 88 56.8
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 9.9e-18 93.6 104 50.0
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 9.9e-18 93.6 72 66.7
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 1.3e-17 93.2 88 55.7
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 1.3e-17 93.2 86 55.8
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 4.9e-17 91.3 86 54.7
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 4.9e-17 91.3 86 54.7
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 6.4e-17 90.9 83 56.6
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 1.4e-16 89.7 84 57.1
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 2.4e-16 89.0 86 53.5
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 2.4e-16 89.0 86 53.5
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 2.4e-16 89.0 86 53.5
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 3.2e-16 88.6 84 56.0
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 3.2e-16 88.6 84 56.0
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 3.2e-16 88.6 84 56.0
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 7.1e-16 87.4 100 52.0
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 1.2e-15 86.7 101 52.5
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 1.2e-15 86.7 101 52.5
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 1.2e-15 86.7 101 52.5
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 1.6e-15 86.3 88 50.0
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 3.5e-15 85.1 102 50.0
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 3.5e-15 85.1 102 50.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 2.3e-14 82.4 97 49.5
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 1.5e-13 79.7 59 62.7
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 2.5e-13 79.0 71 59.2
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 7.4e-13 77.4 42 85.7
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 9.6e-13 77.0 74 56.8
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 2.1e-12 75.9 98 45.9
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 8.2e-12 73.9 97 46.4
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 1.1e-11 73.6 111 42.3
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 2.4e-11 72.4 103 43.7
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 5.3e-11 71.2 112 42.0
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 5.3e-11 71.2 54 66.7
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 9.0e-11 70.5 70 54.3
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 9.0e-11 70.5 49 63.3
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 5.8e-10 67.8 42 73.8
AUR62015628 Chenopodium quinoa HOM05D023068 ORTHO05D009506 7.6e-10 67.4 50 68.0
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 7.6e-10 67.4 106 40.6
Oeu052012.1 Olea europaea HOM05D037150 ORTHO05D009506 7.6e-10 67.4 47 61.7
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 1.0e-09 67.0 42 73.8
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 1.3e-09 66.6 108 41.7
AUR62029333 Chenopodium quinoa HOM05D023068 ORTHO05D009506 1.7e-09 66.2 46 71.7
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 3.8e-09 65.1 107 43.9
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 6.5e-09 64.3 54 63.0
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 4.2e-08 61.6 118 40.7
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 5.5e-08 61.2 38 76.3
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 9.3e-08 60.5 109 43.1
Ah.04g165060 Amaranthus hybridus HOM05D023068 ORTHO05D009506 1.6e-07 59.7 48 62.5
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 3.5e-07 58.5 104 38.5
Ah.06g183770 Amaranthus hybridus HOM05D023068 ORTHO05D009506 1.3e-06 56.6 45 66.7
Migut.M00865 Erythranthe guttata HOM05D023068 ORTHO05D009506 2.3e-06 55.8 99 40.4
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 3.0e-06 55.5 36 69.4
PGR031G0494 Punica granatum HOM05D007708 ORTHO05D009506 6.7e-06 54.3 64 51.6


User provided reference genes

Program Settings