Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 6.5e-160 567.4 295 100.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.8e-147 524.6 295 90.5
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.4e-146 523.1 295 89.5
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 2.4e-146 522.3 295 89.2
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 2.6e-145 518.8 295 89.5
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 4.5e-145 518.1 296 90.2
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-144 516.5 296 90.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.0e-144 514.6 300 89.0
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 5.0e-144 514.6 295 87.8
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 6.5e-144 514.2 303 86.5
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 8.5e-144 513.8 299 88.3
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 2.5e-143 512.3 295 88.5
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.5e-143 512.3 296 88.5
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 2.5e-143 512.3 291 86.9
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.2e-143 511.9 295 88.1
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 4.2e-143 511.5 294 88.1
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.2e-143 511.5 297 89.2
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 7.2e-143 510.8 295 86.8
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 9.4e-143 510.4 301 85.7
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.6e-142 509.6 295 85.8
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.6e-142 509.6 297 87.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.7e-142 508.8 297 87.9
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.7e-142 508.8 297 87.5
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 3.6e-142 508.4 295 87.8
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 4.7e-142 508.1 295 86.1
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 4.7e-142 508.1 295 87.1
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.1e-142 507.7 298 87.6
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 8.0e-142 507.3 278 89.2
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 8.0e-142 507.3 278 89.2
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 8.0e-142 507.3 278 89.2
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 8.0e-142 507.3 278 89.2
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 8.0e-142 507.3 278 89.2
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.0e-141 506.9 298 85.2
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 1.0e-141 506.9 298 85.6
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.0e-141 506.9 280 88.6
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.0e-141 506.9 295 88.1
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.4e-141 506.5 295 85.8
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 5.2e-141 504.6 282 89.0
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 6.7e-141 504.2 295 85.1
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 6.7e-141 504.2 283 88.7
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 6.7e-141 504.2 283 88.7
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 6.7e-141 504.2 294 88.1
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.8e-141 503.8 278 88.5
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 8.8e-141 503.8 298 85.9
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.1e-140 503.4 296 84.5
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 1.5e-140 503.1 278 88.1
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.0e-140 502.7 295 84.4
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.0e-140 502.7 298 83.9
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.6e-140 502.3 280 88.2
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.6e-140 502.3 303 86.1
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 3.3e-140 501.9 281 89.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.3e-140 501.9 281 89.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.7e-140 501.1 295 86.1
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 5.7e-140 501.1 281 89.7
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 9.7e-140 500.4 290 86.6
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.3e-139 500.0 293 85.0
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.3e-139 500.0 274 90.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.3e-139 500.0 296 84.8
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 3.7e-139 498.4 280 88.2
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 6.3e-139 497.7 289 85.8
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 8.2e-139 497.3 295 86.1
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.1e-138 496.9 289 85.1
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.8e-138 496.1 281 88.3
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.8e-138 496.1 298 84.9
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 3.1e-138 495.4 281 87.2
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 5.3e-138 494.6 281 86.8
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 5.3e-138 494.6 285 87.0
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.2e-137 493.4 281 87.5
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 3.5e-137 491.9 280 86.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 5.9e-137 491.1 295 83.4
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 5.9e-137 491.1 299 84.6
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 7.7e-137 490.7 282 87.2
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.3e-136 490.0 297 83.2
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-136 490.0 280 86.4
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.3e-136 490.0 300 85.3
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.7e-136 489.6 295 83.4
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 5.0e-136 488.0 280 86.4
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.1e-135 486.9 280 86.1
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.5e-135 486.5 307 81.4
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.9e-135 486.1 281 86.8
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 2.5e-135 485.7 281 85.4
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 3.2e-135 485.3 281 86.1
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 3.2e-135 485.3 296 83.1
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.6e-134 483.0 280 85.7
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.6e-134 481.9 278 86.7
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.7e-134 481.5 280 87.1
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.4e-133 479.9 293 80.5
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.4e-133 479.9 265 89.1
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.4e-133 479.9 297 82.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 1.4e-133 479.9 295 83.7
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.8e-133 479.6 299 84.3
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-133 479.6 280 85.4
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 6.7e-133 477.6 280 85.0
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.2e-132 476.9 280 84.3
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 2.2e-131 472.6 293 80.5
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.8e-131 472.2 295 80.7
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 6.3e-131 471.1 280 84.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 6.3e-131 471.1 311 78.5
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.4e-130 469.2 280 82.9
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.4e-130 469.2 296 80.4
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.3e-130 468.0 280 83.2
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 7.0e-130 467.6 278 84.2
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 2.0e-129 466.1 278 81.7
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.5e-129 465.3 279 83.2
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 4.5e-129 464.9 293 80.2
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 4.5e-129 464.9 296 78.0
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 5.9e-129 464.5 281 85.1
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 5.9e-129 464.5 280 83.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 8.5e-128 460.7 281 82.2
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 5.5e-127 458.0 384 68.0
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.7e-126 455.7 268 85.8
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 3.6e-126 455.3 302 76.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 8.0e-126 454.1 275 83.3
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 8.0e-126 454.1 300 76.7
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 4.0e-125 451.8 279 79.6
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 5.2e-125 451.4 326 75.8
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.4e-124 448.7 282 80.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 5.4e-122 441.4 266 83.1
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.6e-121 439.9 291 74.6
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 2.0e-121 439.5 277 78.7
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.7e-121 439.1 252 86.9
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.5e-119 433.3 286 77.6
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 2.6e-116 422.5 255 82.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 1.7e-115 419.9 280 77.1
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 5.4e-114 414.8 262 79.4
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 7.0e-114 414.5 221 91.9
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.2e-114 414.1 221 91.9
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 6.1e-110 401.4 278 70.9
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-108 396.7 218 88.1
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-108 396.7 218 88.1
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 8.3e-107 391.0 250 74.8
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 9.2e-106 387.5 273 69.2
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.2e-105 387.1 251 74.5
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.6e-102 376.7 219 85.4
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.6e-102 375.6 303 67.7
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 8.0e-102 374.4 200 90.5
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 3.7e-99 365.5 252 69.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.3e-96 357.1 215 84.7
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 1.3e-91 340.5 182 92.3
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 5.4e-90 335.1 182 88.5
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 4.3e-87 325.5 208 79.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 8.4e-83 311.2 174 87.9
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.9e-79 300.1 181 82.3
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 3.3e-79 299.3 221 73.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 6.0e-73 278.5 152 90.1
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.9e-66 256.9 194 66.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.3e-62 244.2 146 81.5
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 2.0e-60 236.9 209 63.6
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-48 197.6 119 78.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 8.7e-48 194.9 238 49.2
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 4.8e-46 189.1 158 63.9
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.1e-45 186.0 136 72.1
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 7.2e-42 175.3 177 57.1
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 9.4e-42 174.9 105 80.0
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 6.9e-37 158.7 86 87.2
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 4.5e-36 156.0 96 78.1
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.8e-32 141.7 89 77.5
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 3.7e-30 136.3 94 76.6
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 8.2e-30 135.2 303 33.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.9e-27 126.7 196 43.9
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 2.7e-25 120.2 66 89.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 2.7e-25 120.2 66 89.4
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.0e-24 118.2 171 42.1
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-18 97.8 62 82.3
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-18 97.8 62 82.3
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 5.2e-16 89.4 158 39.9
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 6.8e-16 89.0 53 77.4
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-14 84.7 85 54.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-13 81.6 79 53.2
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 9.1e-13 78.6 76 71.1
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 2.0e-12 77.4 92 47.8
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.7e-12 77.0 62 64.5
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 2.9e-11 73.6 103 42.7
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 6.5e-11 72.4 59 64.4
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.5e-10 71.2 110 40.9
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.3e-08 63.9 43 74.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 2.0e-07 60.8 53 60.4
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.4e-07 60.1 34 79.4
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 3.4e-07 60.1 57 47.4
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.2e-06 57.4 38 73.7
MCO17G054 Micromonas commoda HOM05D003815 ORTHO05D270498 2.2e-06 57.4 142 31.7
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.8e-06 57.0 31 77.4


User provided reference genes

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