Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G110500 Manihot esculenta HOM05D006733 ORTHO05D008406 8.5e-23 109.8 68 100.0
Manes.15G086700 Manihot esculenta HOM05D006733 ORTHO05D008406 8.0e-21 103.2 68 88.2
Potri.001G400100 Populus trichocarpa HOM05D006733 ORTHO05D008406 3.1e-17 91.3 68 82.4
Potri.011G118900 Populus trichocarpa HOM05D006733 ORTHO05D008406 5.3e-17 90.5 68 88.2
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 5.9e-16 87.0 53 79.2
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 1.0e-15 86.3 68 66.2
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 1.3e-15 85.9 53 73.6
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 2.9e-15 84.7 64 67.2
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 3.8e-15 84.3 51 80.4
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 1.1e-14 82.8 53 77.4
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 1.1e-14 82.8 53 75.5
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 1.9e-14 82.0 68 64.7
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 4.2e-14 80.9 53 77.4
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 4.2e-14 80.9 67 62.7
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 5.5e-14 80.5 53 77.4
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 5.5e-14 80.5 53 77.4
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 5.5e-14 80.5 68 64.7
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 5.5e-14 80.5 68 63.2
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 9.4e-14 79.7 68 63.2
CiPaw.12G118000 Carya illinoinensis HOM05D006733 ORTHO05D008406 1.6e-13 79.0 68 61.8
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 4.7e-13 77.4 53 73.6
Nn1g04087 Nelumbo nucifera HOM05D006733 ORTHO05D008406 6.1e-13 77.0 50 74.0
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 6.1e-13 77.0 68 63.2
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 8.0e-13 76.6 68 60.3
MBI07_g30176_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 8.0e-13 76.6 66 78.8
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 1.4e-12 75.9 68 60.3
COL.COLO4_27167 Corchorus olitorius HOM05D006733 ORTHO05D008406 2.3e-12 75.1 53 71.7
Aqoxy4G00809 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 3.0e-12 74.7 53 71.7
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 4.0e-12 74.3 53 73.6
Gohir.D01G050200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.0e-12 74.3 52 73.1
Gorai.002G070100 Gossypium raimondii HOM05D006733 ORTHO05D008406 4.0e-12 74.3 52 73.1
Gohir.A04G030100 Gossypium hirsutum HOM05D006733 ORTHO05D008406 5.2e-12 73.9 53 69.8
Gohir.D05G356200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 5.2e-12 73.9 53 69.8
Gohir.D05G356700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 5.2e-12 73.9 53 69.8
Gorai.009G388600 Gossypium raimondii HOM05D006733 ORTHO05D008406 5.2e-12 73.9 53 69.8
Gorai.009G388900 Gossypium raimondii HOM05D006733 ORTHO05D008406 5.2e-12 73.9 53 69.8
SalBow7G4025 Salvia bowleyana HOM05D006733 ORTHO05D008406 6.8e-12 73.6 53 69.8
Thecc.07G089300 Theobroma cacao HOM05D006733 ORTHO05D008406 6.8e-12 73.6 68 55.9
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 1.2e-11 72.8 68 60.3
Gohir.D11G297700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.5e-11 72.4 68 57.4
Gorai.007G322600 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.5e-11 72.4 68 57.4
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 1.5e-11 72.4 53 67.9
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 2.0e-11 72.0 53 69.8
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 2.0e-11 72.0 51 62.7
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 2.0e-11 72.0 51 62.7
MBI06_g04174_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 2.0e-11 72.0 67 58.2
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 2.6e-11 71.6 51 60.8
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 2.6e-11 71.6 51 60.8
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 2.6e-11 71.6 53 62.3
Duzib170G0030 Durio zibethinus HOM05D006733 ORTHO05D008406 2.6e-11 71.6 53 69.8
Gohir.D05G356800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.6e-11 71.6 53 67.9
Gorai.009G389000 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.6e-11 71.6 53 67.9
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 2.6e-11 71.6 51 72.5
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 3.4e-11 71.2 68 58.8
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 5.7e-11 70.5 51 62.7
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 5.7e-11 70.5 68 52.9
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 7.5e-11 70.1 53 69.8
Glyma.12G154300 Glycine max HOM05D006733 ORTHO05D008406 7.5e-11 70.1 68 58.8
Gohir.A04G030300 Gossypium hirsutum HOM05D006733 ORTHO05D008406 7.5e-11 70.1 53 66.0
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 7.5e-11 70.1 68 57.4
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 9.8e-11 69.7 53 62.3
ClCG10G006940 Citrullus lanatus HOM05D006733 ORTHO05D008406 1.3e-10 69.3 50 68.0
Duzib170G0610 Durio zibethinus HOM05D006733 ORTHO05D008406 1.3e-10 69.3 53 66.0
DCAR_020986 Daucus carota HOM05D006733 ORTHO05D008406 2.2e-10 68.6 52 67.3
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 2.2e-10 68.6 53 64.2
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 2.8e-10 68.2 51 62.7
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 2.8e-10 68.2 52 69.2
Gohir.A11G284800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.7e-10 67.8 68 55.9
Gorai.009G388200 Gossypium raimondii HOM05D006733 ORTHO05D008406 3.7e-10 67.8 53 62.3
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 4.8e-10 67.4 53 58.5
MD03G1227300 Malus domestica HOM05D006733 ORTHO05D008406 4.8e-10 67.4 68 52.9
MD03G1227500 Malus domestica HOM05D006733 ORTHO05D008406 4.8e-10 67.4 68 52.9
Sc03g0009960 Simmondsia chinensis HOM05D006733 ORTHO05D008406 4.8e-10 67.4 53 62.3
HPP92_020054 Vanilla planifolia HOM05D006733 ORTHO05D008406 6.3e-10 67.0 50 66.0
Gohir.D05G355800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 8.3e-10 66.6 53 62.3
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 1.1e-09 66.2 68 52.9
Gorai.009G388700 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.4e-09 65.9 53 66.0
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 1.4e-09 65.9 53 62.3
Duzib213G0299 Durio zibethinus HOM05D006733 ORTHO05D008406 1.8e-09 65.5 53 66.0
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 1.8e-09 65.5 53 60.4
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 1.8e-09 65.5 68 50.0
CsaV3_3G006310 Cucumis sativus L. HOM05D006733 ORTHO05D008406 2.4e-09 65.1 50 64.0
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 4.1e-09 64.3 53 62.3
RcHm_v2.0_Chr5g0033741 Rosa chinensis HOM05D006733 ORTHO05D008406 4.1e-09 64.3 53 67.9
TAR629G0476 Trochodendron aralioides HOM05D006733 ORTHO05D008406 4.1e-09 64.3 43 69.8
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 7.0e-09 63.5 53 56.6
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 9.1e-09 63.2 53 58.5
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 9.1e-09 63.2 53 58.5
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 2.7e-08 61.6 68 54.4
Os01g0200700 Oryza sativa ssp. japonica HOM05D006733 ORTHO05D008406 3.5e-08 61.2 53 62.3
Sed0028027 Sechium edule HOM05D006733 ORTHO05D008406 4.5e-08 60.8 52 59.6
arahy.Tifrunner.gnm1.ann1.KTTP1X Arachis hypogaea HOM05D006733 ORTHO05D008406 5.9e-08 60.5 53 66.0
Hund02223 Selenicereus undatus HOM05D006733 ORTHO05D008406 7.7e-08 60.1 53 58.5
Oeu060552.1 Olea europaea HOM05D006733 ORTHO05D008406 1.0e-07 59.7 48 60.4
arahy.Tifrunner.gnm1.ann1.W6Q2IR Arachis hypogaea HOM05D006733 ORTHO05D008406 1.3e-07 59.3 53 64.2
AT3G15353 Arabidopsis thaliana HOM05D006733 ORTHO05D008406 6.6e-07 57.0 48 58.3
MELO3C016513.2 Cucumis melo HOM05D006733 ORTHO05D008406 1.1e-06 56.2 58 53.4
Gohir.A01G063800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.5e-06 55.8 37 70.3
Hund22902 Selenicereus undatus HOM05D006733 ORTHO05D008406 1.5e-06 55.8 50 60.0
PGSC0003DMG400015318 Solanum tuberosum HOM05D006733 ORTHO05D008406 1.9e-06 55.5 53 58.5
PSO541G4814 Papaver somniferum HOM05D006733 ORTHO05D008406 3.3e-06 54.7 50 52.0
CAN.G739.12 Capsicum annuum HOM05D006733 ORTHO05D008406 4.2e-06 54.3 68 51.5


User provided reference genes

Program Settings