Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 3.6e-283 977.6 510 100.0
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 2.0e-209 732.6 525 71.6
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 5.5e-207 724.5 527 72.5
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 5.7e-204 714.5 527 71.3
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 3.7e-203 711.8 527 70.4
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 1.4e-202 709.9 527 68.9
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 7.7e-201 704.1 527 68.5
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 2.2e-200 702.6 527 69.3
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 1.8e-197 693.0 525 67.6
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 2.2e-195 686.0 527 68.1
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 6.9e-194 681.0 526 66.2
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.5e-193 679.9 527 66.6
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 3.4e-193 678.7 527 66.2
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 5.9e-193 677.9 527 66.6
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 6.5e-192 674.5 530 67.7
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 1.2e-190 670.2 527 65.8
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 2.1e-190 669.5 527 67.6
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 3.6e-190 668.7 521 67.0
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 4.7e-190 668.3 527 65.7
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 6.1e-190 667.9 530 67.2
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 1.4e-189 666.8 526 66.3
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 3.0e-189 665.6 525 66.3
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 1.1e-188 663.7 527 66.6
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 1.1e-188 663.7 527 67.0
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 9.7e-188 660.6 524 66.0
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 2.2e-187 659.4 542 63.7
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 8.2e-187 657.5 539 64.2
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 2.4e-186 656.0 553 63.5
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 3.1e-186 655.6 551 62.8
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 1.2e-185 653.7 551 62.6
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 1.6e-185 653.3 527 66.0
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 2.6e-185 652.5 526 65.0
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 4.5e-185 651.7 525 65.9
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.3e-184 650.2 525 64.4
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 1.9e-183 646.4 524 64.9
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 1.2e-182 643.7 525 63.8
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 1.6e-182 643.3 525 63.2
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 4.7e-182 641.7 525 64.2
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 1.8e-181 639.8 539 62.7
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 2.0e-180 636.3 531 63.8
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 2.0e-180 636.3 531 63.8
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 9.7e-180 634.0 528 64.2
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.7e-179 633.3 541 64.0
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 6.3e-179 631.3 527 62.8
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 6.3e-179 631.3 527 63.0
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 2.4e-178 629.4 527 64.1
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 4.1e-178 628.6 527 63.6
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 7.0e-178 627.9 525 62.5
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 2.0e-177 626.3 527 62.4
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 2.0e-177 626.3 527 62.6
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 5.9e-177 624.8 526 63.5
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 2.5e-175 619.4 525 62.3
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 2.1e-174 616.3 525 61.9
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 8.0e-174 614.4 527 60.2
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 5.2e-173 611.7 528 61.2
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 5.2e-173 611.7 527 61.1
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 2.0e-172 609.8 528 61.0
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 3.4e-172 609.0 529 61.1
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 9.8e-172 607.4 526 60.6
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 6.3e-171 604.7 527 61.9
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 2.9e-168 595.9 464 66.6
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 1.4e-165 587.0 645 52.6
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 3.7e-163 578.9 564 56.7
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 3.5e-161 572.4 526 59.1
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 7.8e-161 571.2 526 58.0
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 8.6e-160 567.8 521 56.6
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 4.3e-159 565.5 521 56.6
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 5.6e-159 565.1 525 56.4
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 8.0e-158 561.2 521 56.4
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 8.9e-157 557.8 521 55.9
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 1.4e-154 550.4 527 58.6
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 2.4e-154 549.7 523 55.4
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 9.2e-154 547.7 469 62.0
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 6.6e-152 541.6 575 53.9
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 8.6e-152 541.2 548 53.1
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 3.3e-151 539.3 547 53.2
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 9.5e-151 537.7 535 53.6
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 1.4e-149 533.9 510 55.3
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 4.0e-149 532.3 532 54.1
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 4.0e-149 532.3 521 55.9
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 2.6e-148 529.6 519 56.1
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 2.4e-146 523.1 526 54.0
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 2.4e-146 523.1 529 54.8
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 1.7e-139 500.4 447 59.1
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 4.1e-138 495.7 407 64.6
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 3.9e-136 489.2 451 60.1
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 9.9e-132 474.6 516 48.3
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 1.2e-129 467.6 389 63.8
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 1.4e-125 454.1 516 46.5
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 1.1e-114 417.9 412 56.6
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 7.1e-114 415.2 407 58.0
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 6.7e-112 408.7 330 63.9
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 1.6e-105 387.5 330 60.3
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 2.3e-104 383.6 555 43.1
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 2.4e-101 373.6 525 43.4
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.8e-88 330.9 290 60.3
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.8e-88 330.9 290 60.3
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 8.2e-86 322.0 344 54.4
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 1.2e-84 318.2 241 66.8
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 1.9e-82 310.8 515 37.9
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.2e-81 308.1 430 45.3
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 3.1e-77 293.5 270 58.9
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 1.0e-72 278.5 538 34.6
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 3.1e-69 266.9 289 54.3
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 2.1e-65 254.2 527 34.0
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 9.7e-63 245.4 195 66.7
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 2.2e-62 244.2 229 56.3
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 4.8e-54 216.5 216 52.3
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 7.0e-53 212.6 172 64.5
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 2.0e-47 194.5 163 62.6
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 3.3e-42 177.2 494 29.1
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 1.2e-39 168.7 106 74.5
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 2.4e-37 161.0 113 69.9
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 6.0e-36 156.4 290 36.9
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.8e-24 118.2 142 43.7
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.1e-21 109.0 116 46.6
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 5.4e-21 106.7 85 60.0
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 4.6e-20 103.6 91 56.0
MELO3C030698.2 Cucumis melo HOM05D005607 ORTHO05D169846 1.7e-11 75.1 139 38.8
HanXRQChr10g0304121 Helianthus annuus HOM05D005607 ORTHO05D008142 3.9e-11 73.9 64 67.2
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-11 73.2 77 48.1
MELO3C033981.2 Cucumis melo HOM05D005607 ORTHO05D166899 4.0e-08 63.9 69 50.7
SEGI_12563 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 6.9e-08 63.2 75 49.3


User provided reference genes

Program Settings