Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 0.0e+00 1223.4 692 100.0
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 8.4e-251 870.5 699 70.8
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.6e-183 646.4 739 55.6
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-182 644.0 739 56.0
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.5e-178 630.6 753 54.3
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 5.2e-176 622.1 731 54.6
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 3.4e-167 592.8 711 54.6
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.1e-152 544.7 727 52.3
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 6.8e-152 542.0 739 51.6
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 7.6e-151 538.5 764 47.8
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.9e-150 536.6 736 52.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 3.8e-150 536.2 742 55.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.4e-149 533.5 745 51.7
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 6.0e-148 528.9 755 49.8
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.1e-146 524.6 737 53.1
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 3.1e-144 516.5 735 52.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 8.9e-144 515.0 719 51.9
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 7.8e-140 501.9 731 49.8
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 9.6e-138 495.0 731 47.2
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.4e-136 490.3 738 49.7
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.4e-133 479.2 738 48.9
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.1e-132 477.2 752 46.3
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.3e-129 468.0 736 48.1
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.1e-129 467.2 729 49.5
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.8e-129 466.8 724 50.0
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.9e-126 456.8 728 48.6
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.8e-126 456.4 754 46.6
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 6.4e-126 455.7 749 46.5
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.9e-125 454.1 718 46.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.3e-123 448.0 740 46.5
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.3e-123 448.0 767 45.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.1e-122 444.9 723 44.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.9e-122 444.1 711 46.6
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 7.4e-122 442.2 727 46.1
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.3e-121 441.4 701 46.2
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 1.6e-121 441.0 725 44.6
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.8e-121 440.3 729 49.1
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 8.1e-121 438.7 715 47.4
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 8.1e-121 438.7 717 43.9
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.1e-120 436.8 754 45.2
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 3.2e-117 426.8 757 45.0
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.6e-116 424.5 771 45.4
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.7e-116 423.7 730 45.9
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 3.5e-116 423.3 768 48.2
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.9e-114 417.5 689 45.9
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 9.6e-114 415.2 764 43.3
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.6e-113 414.5 725 43.9
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.8e-112 411.0 726 47.8
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 3.1e-112 410.2 752 43.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 6.9e-112 409.1 723 43.4
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 9.0e-112 408.7 825 46.3
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 7.6e-111 405.6 763 41.8
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.5e-109 400.6 710 43.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.2e-109 400.2 744 45.0
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 9.3e-109 398.7 736 44.6
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 6.1e-108 396.0 722 43.2
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.3e-107 394.8 752 42.8
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 4.3e-106 389.8 709 46.7
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.2e-103 381.7 704 42.5
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.2e-103 381.7 764 41.2
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.0e-103 380.9 746 41.0
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 5.9e-103 379.4 707 41.6
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.7e-102 377.9 643 44.6
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 8.5e-102 375.6 732 43.6
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.9e-101 374.4 698 45.6
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.2e-101 373.2 707 42.6
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.6e-100 371.3 590 47.6
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 5.1e-99 366.3 733 39.6
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 9.7e-98 362.1 683 43.2
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-97 360.9 700 42.0
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.1e-96 358.6 730 41.9
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 4.1e-96 356.7 739 39.8
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.1e-96 356.7 734 48.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 4.1e-96 356.7 749 40.6
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 5.3e-96 356.3 712 42.6
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.9e-95 352.8 733 46.8
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 3.8e-94 350.1 747 42.8
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 5.0e-94 349.7 694 43.2
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 6.5e-94 349.4 741 44.0
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.5e-93 346.3 707 42.7
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 3.9e-91 340.1 720 45.1
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 6.7e-91 339.3 727 42.6
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.0e-90 337.8 718 44.6
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 7.4e-90 335.9 747 38.6
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-89 335.1 784 38.0
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.8e-89 334.0 802 38.2
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 3.7e-89 333.6 712 40.9
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 8.2e-89 332.4 726 41.2
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.1e-88 332.0 736 38.3
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 2.4e-88 330.9 736 39.9
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.0e-87 327.8 736 37.8
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 5.9e-87 326.2 745 38.4
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 4.2e-85 320.1 784 38.0
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 5.5e-85 319.7 781 41.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 9.4e-85 318.9 732 38.3
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.4e-83 315.1 652 49.2
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 4.0e-83 313.5 762 43.6
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.5e-82 311.6 723 40.7
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.0e-82 311.2 771 42.9
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.2e-81 307.8 708 45.1
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.2e-81 307.8 803 37.1
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 2.7e-79 300.8 736 43.5
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.7e-79 300.8 685 42.6
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.2e-78 297.7 720 37.1
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.2e-77 293.9 734 37.3
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.0e-75 288.9 783 36.4
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.2e-74 285.4 722 42.0
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 5.7e-74 283.1 701 36.4
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.4e-72 278.5 711 35.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.0e-71 274.6 704 36.2
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.5e-71 273.5 785 36.8
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 6.5e-70 269.6 747 36.8
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 6.8e-67 259.6 759 34.7
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 8.8e-67 259.2 698 35.5
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.6e-66 257.7 738 38.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 3.7e-65 253.8 692 34.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.8e-64 251.5 767 33.2
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 3.1e-64 250.8 751 34.1
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.3e-61 240.7 669 35.0
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-59 235.0 669 34.4
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 5.7e-58 229.9 718 39.3
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.7e-57 227.3 670 34.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 3.2e-56 224.2 629 34.3
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 5.4e-56 223.4 580 37.8
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.2e-55 222.2 695 31.7
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 9.8e-50 202.6 775 32.6
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.2e-49 201.4 483 38.3
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 7.0e-48 196.4 708 33.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 4.6e-47 193.7 800 32.9
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 5.0e-46 190.3 666 31.8
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 6.6e-46 189.9 737 30.5
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.1e-45 189.1 603 32.8
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.5e-45 188.0 660 32.0
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 7.3e-45 186.4 154 65.6
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 7.3e-45 186.4 660 31.7
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-44 185.7 381 40.4
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.1e-44 184.9 698 31.9
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.7e-44 183.7 235 50.2
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 6.2e-44 183.3 731 32.3
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 8.1e-44 183.0 727 33.1
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.1e-43 182.6 723 33.2
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.1e-43 182.6 723 33.2
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 9.9e-42 176.0 731 33.2
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 4.9e-41 173.7 841 34.0
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 9.2e-40 169.5 842 33.4
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.6e-39 168.7 306 42.8
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.6e-39 168.7 729 35.1
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.6e-39 168.7 814 33.8
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 4.6e-39 167.2 735 32.0
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 7.8e-39 166.4 257 46.7
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 3.0e-38 164.5 216 47.7
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.1e-38 163.7 290 44.1
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.0e-34 151.8 489 32.7
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.9e-32 145.2 713 30.0
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.6e-31 140.6 391 34.8
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.5e-29 134.8 244 40.6
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 2.5e-29 134.8 164 51.2
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.8e-27 128.6 173 46.8
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.5e-26 125.6 116 61.2
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 2.2e-25 121.7 138 54.3
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 3.8e-25 120.9 110 70.9
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.9e-21 108.6 534 28.1
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 9.6e-21 106.3 102 68.6
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.5e-18 99.0 177 39.5
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.6e-18 98.2 695 26.2
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 8.7e-14 83.2 342 28.1
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-13 82.8 74 62.2
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.7e-12 77.8 262 28.6
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.8e-12 77.4 588 33.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 5.3e-11 73.9 54 74.1
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 4.9e-09 67.4 340 28.5
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-07 62.4 341 27.0
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.6e-07 62.4 355 30.4
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.1e-07 62.0 324 29.0
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.0e-07 60.5 84 50.0
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 7.9e-07 60.1 408 26.0
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.3e-06 59.3 88 52.3
Cfa006246 Carpinus fangiana HOM05D002615 ORTHO05D002913 3.0e-06 58.2 58 58.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.0e-06 58.2 373 27.6
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.9e-06 57.8 344 26.5
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 5.1e-06 57.4 386 25.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 5.1e-06 57.4 86 47.7
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 5.1e-06 57.4 310 28.1
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 8.7e-06 56.6 354 26.8


User provided reference genes

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