Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.8e-154 549.3 297 100.0
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 3.9e-120 435.3 297 81.1
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 7.3e-119 431.0 297 80.1
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 2.3e-117 426.0 297 79.1
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 3.1e-117 425.6 297 79.5
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 5.2e-117 424.9 297 79.1
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.5e-116 423.3 297 79.8
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.0e-116 422.9 298 79.2
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.7e-115 419.9 297 78.1
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.9e-114 416.4 296 78.4
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 2.7e-113 412.5 297 75.8
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.0e-113 411.4 297 76.4
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 8.6e-112 407.5 297 74.7
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.1e-111 407.1 296 77.4
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 3.3e-111 405.6 297 75.8
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 4.3e-111 405.2 285 79.3
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.6e-110 403.3 297 76.4
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.7e-110 401.7 297 76.1
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.1e-109 400.6 297 74.7
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.4e-109 400.2 297 75.8
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.8e-109 399.8 296 74.7
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 4.0e-109 398.7 297 75.4
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 6.8e-109 397.9 297 75.4
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.0e-108 396.4 297 73.4
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.0e-108 396.4 298 75.2
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 7.6e-108 394.4 298 74.2
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 3.8e-107 392.1 297 74.1
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 4.9e-107 391.7 297 73.7
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.9e-107 391.7 297 74.1
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.9e-106 389.8 297 73.4
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.4e-106 389.4 297 73.7
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 5.4e-106 388.3 297 73.7
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 9.2e-106 387.5 297 74.1
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.7e-105 386.0 297 74.1
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.7e-105 386.0 266 80.5
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 4.6e-105 385.2 298 72.5
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.3e-104 383.6 299 73.2
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 2.3e-104 382.9 299 72.2
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 2.3e-104 382.9 305 71.5
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 6.6e-104 381.3 301 72.4
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 8.7e-104 380.9 315 69.8
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.5e-103 380.2 299 74.2
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.9e-103 379.8 298 72.8
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.3e-103 379.0 328 68.3
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 7.3e-103 377.9 300 71.0
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.6e-102 375.6 320 67.2
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.7e-102 375.2 332 66.0
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.4e-101 373.6 275 75.3
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.8e-101 373.2 297 72.7
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 5.3e-101 371.7 297 69.4
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.6e-100 369.4 299 71.2
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 3.4e-100 369.0 297 70.0
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 9.9e-100 367.5 298 71.1
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.2e-99 366.3 298 71.1
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 2.9e-99 365.9 297 69.7
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 3.8e-99 365.5 298 68.8
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 3.8e-99 365.5 304 68.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.4e-98 363.6 360 60.8
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 2.4e-98 362.8 299 68.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 7.1e-98 361.3 299 69.6
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 7.1e-98 361.3 297 69.7
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 2.1e-97 359.8 297 70.0
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 7.8e-97 357.8 299 67.9
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 3.0e-96 355.9 301 69.1
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 3.0e-96 355.9 301 69.1
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.1e-95 354.0 299 68.2
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.5e-95 353.6 313 66.1
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.5e-95 352.8 300 69.0
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.5e-95 352.8 300 69.0
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 7.3e-95 351.3 300 68.7
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.3e-94 350.5 259 75.7
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.6e-94 350.1 298 67.1
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 4.8e-94 348.6 297 69.0
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 8.1e-94 347.8 297 68.7
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 4.0e-93 345.5 299 66.2
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 3.4e-92 342.4 302 65.6
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 2.2e-91 339.7 265 70.2
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.2e-91 339.7 263 70.0
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.9e-91 339.3 386 55.2
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 3.8e-91 339.0 270 70.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 6.4e-91 338.2 288 65.6
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 8.4e-91 337.8 299 65.9
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 8.4e-91 337.8 297 65.0
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.1e-90 337.4 299 65.9
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 9.3e-90 334.3 296 65.9
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.2e-89 334.0 297 64.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.2e-89 334.0 255 72.9
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 2.1e-89 333.2 381 56.7
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.8e-88 330.1 255 72.5
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.8e-88 330.1 389 54.8
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 5.1e-88 328.6 287 65.9
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 5.1e-88 328.6 296 64.2
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.1e-87 327.4 307 63.8
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.5e-87 327.0 296 63.9
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 4.3e-87 325.5 255 71.0
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 7.4e-87 324.7 297 64.3
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.4e-85 320.5 302 64.6
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 9.0e-85 317.8 258 68.2
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.2e-84 317.4 216 80.1
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.5e-84 317.0 299 62.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.4e-82 310.5 301 63.5
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 6.7e-80 301.6 299 61.9
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.8e-78 296.2 198 82.3
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.0e-75 287.7 221 72.9
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 6.5e-75 285.0 269 63.9
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.6e-73 280.4 242 68.2
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 2.1e-73 280.0 253 61.7
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.3e-70 270.8 218 71.6
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.8e-69 266.9 304 57.6
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 7.7e-68 261.5 183 79.2
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.2e-65 254.2 308 55.5
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 6.7e-64 248.4 177 76.8
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 8.8e-56 221.5 183 68.9
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 4.8e-54 215.7 286 49.7
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 5.3e-53 212.2 184 69.6
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.6e-52 209.9 243 49.8
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.5e-52 209.5 243 49.8
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 7.7e-52 208.4 249 48.6
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 8.8e-48 194.9 149 74.5
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 5.3e-45 185.7 238 45.8
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 4.5e-44 182.6 166 63.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.2e-42 176.4 246 40.7
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.2e-39 167.9 179 56.4
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.7e-39 165.6 119 72.3
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.7e-38 164.1 232 45.3
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 7.0e-37 158.7 119 72.3
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 8.5e-35 151.8 130 64.6
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.0e-31 140.6 222 40.1
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.0e-31 140.6 178 50.6
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 2.2e-30 137.1 79 96.2
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 3.7e-30 136.3 122 61.5
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.2e-25 121.3 109 61.5
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 2.1e-25 120.6 130 53.1
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 3.6e-25 119.8 109 60.6
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 6.8e-24 115.5 109 59.6
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.6e-23 113.6 98 62.2
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 8.9e-16 88.6 67 70.1
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 3.0e-11 73.6 61 65.6
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 3.9e-11 73.2 168 28.6
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 6.6e-11 72.4 57 66.7
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 6.6e-11 72.4 57 66.7
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 6.6e-11 72.4 57 66.7
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 5.2e-08 62.8 216 31.5


User provided reference genes

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