Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 5.6e-263 910.6 533 100.0
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 6.9e-144 515.0 467 63.2
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.5e-140 502.7 475 61.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 4.8e-137 492.3 485 59.2
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.0e-136 489.2 463 62.4
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.6e-135 486.5 478 59.2
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.1e-133 481.1 483 59.6
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.1e-132 476.9 477 60.0
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.7e-132 476.5 478 58.6
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.7e-132 476.5 542 53.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.8e-131 473.8 473 57.1
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 6.7e-131 471.9 482 57.5
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.3e-130 469.5 474 58.6
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 3.3e-130 469.5 488 56.4
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 8.2e-129 464.9 474 56.5
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-128 463.4 474 57.4
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 9.0e-128 461.5 546 53.1
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.5e-127 460.7 466 58.2
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.5e-127 459.1 479 54.9
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.3e-126 457.6 489 56.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.5e-126 454.9 473 56.0
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 9.4e-125 451.4 474 57.6
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.1e-124 450.3 476 56.1
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.7e-124 449.9 475 55.8
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.1e-124 448.7 473 55.6
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 5.1e-123 445.7 508 55.3
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 7.4e-122 441.8 524 51.9
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 4.1e-120 436.0 506 53.4
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 4.5e-119 432.6 527 51.0
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.0e-118 431.4 477 55.6
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.9e-118 429.9 474 55.5
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.8e-118 429.5 476 53.8
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 8.5e-118 428.3 475 56.4
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.1e-117 427.9 481 54.7
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.6e-116 424.1 491 53.2
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 3.6e-116 422.9 476 53.4
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.1e-114 417.9 475 54.1
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.7e-114 415.6 469 53.7
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.4e-112 411.0 437 56.5
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.4e-112 411.0 480 54.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.4e-112 410.2 493 50.7
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 2.4e-112 410.2 476 52.3
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 3.5e-111 406.4 476 53.4
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.3e-110 404.4 479 50.7
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.8e-110 402.9 483 52.2
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.5e-109 400.2 545 53.0
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 4.2e-109 399.4 473 53.5
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 5.5e-109 399.1 470 53.4
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.1e-108 395.6 441 54.6
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.0e-107 394.8 476 52.1
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.4e-107 394.4 332 62.0
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.8e-107 394.0 472 51.3
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 2.3e-107 393.7 467 52.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.5e-106 391.0 474 52.7
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.5e-106 391.0 484 52.5
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.6e-106 390.2 513 48.1
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 4.4e-106 389.4 474 50.6
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 9.7e-106 388.3 474 50.8
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 9.7e-106 388.3 495 50.5
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 9.7e-106 388.3 495 50.5
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.3e-105 387.9 478 51.5
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.3e-105 387.9 472 52.1
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 2.2e-105 387.1 476 50.6
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 5.3e-104 382.5 497 50.5
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 7.0e-104 382.1 473 49.9
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.2e-103 381.3 466 51.7
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.9e-102 376.7 473 49.5
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.9e-102 376.7 474 49.8
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 3.8e-102 376.3 475 49.9
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 5.0e-102 375.9 487 51.3
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 5.0e-102 375.9 460 51.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.5e-101 374.4 468 50.9
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 6.1e-100 369.0 471 49.5
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 8.0e-100 368.6 464 50.4
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.4e-99 367.9 392 55.9
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 5.7e-98 362.5 479 49.3
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 5.4e-96 355.9 478 48.7
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 4.5e-95 352.8 477 48.2
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 8.5e-94 348.6 466 50.2
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 8.5e-94 348.6 477 47.8
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.1e-93 348.2 473 48.6
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.1e-93 348.2 582 43.1
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 7.5e-90 335.5 314 57.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 8.3e-89 332.0 464 48.1
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.1e-88 331.6 464 44.4
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 5.4e-88 329.3 480 46.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 3.5e-87 326.6 473 44.2
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 3.5e-87 326.6 471 45.6
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.7e-86 324.3 466 44.2
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.2e-84 318.2 466 43.1
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.8e-84 317.0 470 44.9
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.0e-83 315.1 379 53.3
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.0e-83 313.5 470 44.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 3.4e-82 310.1 299 59.2
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.3e-81 308.1 475 44.0
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 9.2e-80 302.0 499 41.5
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-79 301.6 296 56.1
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 3.5e-79 300.1 476 42.9
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.0e-78 298.5 469 43.3
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.7e-78 297.7 472 43.0
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 3.3e-77 293.5 462 42.4
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 7.3e-77 292.4 462 42.4
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 4.4e-74 283.1 461 42.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.3e-73 281.6 515 40.8
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.9e-72 277.7 497 40.6
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.4e-72 277.3 478 43.7
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 9.2e-72 275.4 467 42.0
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.3e-69 266.9 487 40.5
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.1e-61 241.9 432 40.3
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.1e-61 241.9 432 40.3
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.9e-61 241.1 373 48.0
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 9.5e-61 238.8 326 45.4
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 4.0e-59 233.4 403 41.7
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 5.2e-59 233.0 374 47.6
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.1e-56 225.3 465 39.1
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 5.1e-46 189.9 504 33.5
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.4e-40 171.8 501 32.1
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.4e-40 171.8 264 42.4
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.1e-40 169.5 440 35.7
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 5.1e-38 163.3 456 29.6
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.6e-31 140.2 175 40.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 5.3e-27 126.7 232 39.7
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.8e-22 111.7 269 35.7
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.5e-18 98.6 164 32.3
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.5e-18 98.6 187 42.8
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.0e-18 98.2 207 40.1
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 2.2e-17 94.7 223 34.5
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 7.2e-16 89.7 64 64.1
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 8.7e-14 82.8 101 52.5
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 8.7e-14 82.8 101 52.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 8.7e-14 82.8 101 52.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 8.7e-14 82.8 101 52.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 8.7e-14 82.8 101 52.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 8.7e-14 82.8 101 52.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 7.4e-13 79.7 96 52.1
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.2e-12 78.2 147 40.1
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 3.1e-11 74.3 121 46.3
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 9.0e-11 72.8 219 26.9
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.0e-09 69.3 42 78.6
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 3.2e-08 64.3 43 69.8


User provided reference genes

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