Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G098816 Manihot esculenta HOM05D004588 ORTHO05D005365 1.3e-45 186.0 93 100.0
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 1.0e-18 96.7 59 83.1
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 5.6e-17 90.9 51 92.2
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 2.4e-12 75.5 58 65.5
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 2.4e-12 75.5 58 67.2
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 3.2e-12 75.1 58 65.5
Nitab4.5_0000073g0450 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.2e-12 75.1 53 69.8
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 1.6e-11 72.8 59 61.0
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 1.6e-11 72.8 60 60.0
Gohir.D05G281600 Gossypium hirsutum HOM05D004588 ORTHO05D005365 2.1e-11 72.4 58 63.8
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 2.1e-11 72.4 56 64.3
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 2.1e-11 72.4 60 66.7
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 2.1e-11 72.4 48 70.8
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 3.5e-11 71.6 49 71.4
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 3.5e-11 71.6 60 58.3
Hund11851 Selenicereus undatus HOM05D004588 ORTHO05D005365 4.6e-11 71.2 51 68.6
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 4.6e-11 71.2 55 61.8
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 6.0e-11 70.9 47 72.3
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 6.0e-11 70.9 41 85.4
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 7.8e-11 70.5 55 61.8
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 7.8e-11 70.5 59 62.7
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 1.0e-10 70.1 55 61.8
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.0e-10 70.1 59 62.7
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 1.0e-10 70.1 55 61.8
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 1.0e-10 70.1 60 65.0
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 1.3e-10 69.7 34 91.2
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.3e-10 69.7 52 63.5
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 1.3e-10 69.7 60 63.3
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.7e-10 69.3 60 60.0
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 1.7e-10 69.3 59 55.9
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 1.7e-10 69.3 59 55.9
Ca_10717_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 2.3e-10 68.9 40 82.5
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 2.3e-10 68.9 58 55.2
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 2.3e-10 68.9 56 58.9
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 2.3e-10 68.9 40 82.5
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 2.3e-10 68.9 56 60.7
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 2.3e-10 68.9 60 60.0
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 2.3e-10 68.9 60 60.0
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 2.3e-10 68.9 40 82.5
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 3.0e-10 68.6 40 80.0
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 3.0e-10 68.6 43 74.4
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 6.6e-10 67.4 60 56.7
Ca_20351_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 6.6e-10 67.4 40 80.0
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 6.6e-10 67.4 51 68.6
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 6.6e-10 67.4 55 60.0
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 6.6e-10 67.4 55 60.0
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 6.6e-10 67.4 60 60.0
Psat0s5319g0080 Pisum sativum HOM05D004588 ORTHO05D005365 6.6e-10 67.4 60 60.0
TAR383G0700 Trochodendron aralioides HOM05D004588 ORTHO05D005365 6.6e-10 67.4 59 62.7
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 8.7e-10 67.0 40 80.0
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 8.7e-10 67.0 38 81.6
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 8.7e-10 67.0 38 81.6
Psat2g183160 Pisum sativum HOM05D004588 ORTHO05D005365 1.1e-09 66.6 40 80.0
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 1.1e-09 66.6 58 56.9
AUR62015449 Chenopodium quinoa HOM05D004588 ORTHO05D005365 1.5e-09 66.2 57 59.6
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 1.9e-09 65.9 42 71.4
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 1.9e-09 65.9 59 64.4
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 2.5e-09 65.5 41 80.5
AUR62002237 Chenopodium quinoa HOM05D004588 ORTHO05D005365 2.5e-09 65.5 54 63.0
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 2.5e-09 65.5 47 68.1
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 3.3e-09 65.1 38 81.6
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 3.3e-09 65.1 39 76.9
AUR62001361 Chenopodium quinoa HOM05D004588 ORTHO05D005365 4.3e-09 64.7 47 70.2
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 4.3e-09 64.7 55 58.2
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 4.3e-09 64.7 31 96.8
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 5.6e-09 64.3 58 58.6
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 5.6e-09 64.3 39 76.9
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 7.3e-09 63.9 42 71.4
Os08g0359600 Oryza sativa ssp. japonica HOM05D004588 ORTHO05D005365 7.3e-09 63.9 58 58.6
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 9.6e-09 63.5 40 75.0
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 9.6e-09 63.5 41 70.7
Peaxi162Scf00047g02426 Petunia axillaris HOM05D000445 ORTHO05D005365 9.6e-09 63.5 43 69.8
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 1.6e-08 62.8 44 68.2
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 1.6e-08 62.8 39 74.4
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 2.1e-08 62.4 39 74.4
SEGI_30295 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 2.1e-08 62.4 41 73.2
SEGI_39311 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 2.1e-08 62.4 41 73.2
THA.LOC104798808 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 2.8e-08 62.0 58 56.9
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 3.6e-08 61.6 58 51.7
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 3.6e-08 61.6 40 72.5
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 3.6e-08 61.6 50 66.0
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 3.6e-08 61.6 59 52.5
THA.LOC104800355 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 3.6e-08 61.6 63 52.4
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 3.6e-08 61.6 54 55.6
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 4.8e-08 61.2 30 93.3
PGSC0003DMG400002922 Solanum tuberosum HOM05D004588 ORTHO05D005365 4.8e-08 61.2 56 58.9
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 4.8e-08 61.2 47 59.6
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 6.2e-08 60.8 40 67.5
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 6.2e-08 60.8 31 87.1
Solyc12g009380.2 Solanum lycopersicum HOM05D004588 ORTHO05D005365 6.2e-08 60.8 37 78.4
Sopen12g004370 Solanum pennellii HOM05D004588 ORTHO05D005365 6.2e-08 60.8 37 78.4
BcaC07g37057 Brassica carinata HOM05D004588 ORTHO05D005365 8.1e-08 60.5 42 64.3
BolC8t47225H Brassica oleracea HOM05D004588 ORTHO05D005365 8.1e-08 60.5 42 64.3
CSS0016928 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 8.1e-08 60.5 50 62.0
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 8.1e-08 60.5 32 78.1
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 1.4e-07 59.7 31 83.9
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.4e-07 59.7 31 83.9
FAN13G2885 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.4e-07 59.7 31 83.9
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.4e-07 59.7 31 83.9
Peaxi162Scf00474g00216 Petunia axillaris HOM05D004588 ORTHO05D005365 1.4e-07 59.7 37 75.7
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 1.4e-07 59.7 32 78.1
Aa31LG10G4590 Aethionema arabicum HOM05D004588 ORTHO05D005365 1.8e-07 59.3 32 84.4
AL1G56520 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 2.4e-07 58.9 36 75.0
AL1G56550 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 2.4e-07 58.9 36 75.0
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 3.1e-07 58.5 52 51.9
BcaB04g17345 Brassica carinata HOM05D004588 ORTHO05D005365 4.0e-07 58.2 32 81.2
C08p04210 Brassica napus HOM05D004588 ORTHO05D005365 4.0e-07 58.2 32 81.2
Carub.0001s3858 Capsella rubella HOM05D004588 ORTHO05D005365 4.0e-07 58.2 32 81.2
Thhalv10011874m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 4.0e-07 58.2 32 81.2
Aa31LG8G5720 Aethionema arabicum HOM05D004588 ORTHO05D005365 5.3e-07 57.8 32 78.1
AT1G49400 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 5.3e-07 57.8 32 78.1
Sp1g36240 Schrenkiella parvula HOM05D004588 ORTHO05D005365 5.3e-07 57.8 32 78.1
Sp3g16980 Schrenkiella parvula HOM05D004588 ORTHO05D005365 5.3e-07 57.8 32 78.1
A08p03610 Brassica napus HOM05D004588 ORTHO05D005365 6.9e-07 57.4 32 81.2
FAN14G2878 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.9e-07 57.4 31 80.6
Nitab4.5_0000170g0150 Nicotiana tabacum HOM05D004588 ORTHO05D005365 6.9e-07 57.4 55 56.4
PSO170G5232 Papaver somniferum HOM05D004588 ORTHO05D005365 6.9e-07 57.4 40 70.0
PSO407G0251 Papaver somniferum HOM05D004588 ORTHO05D005365 6.9e-07 57.4 40 70.0
Prupe.1G001800 Prunus persica HOM05D004588 ORTHO05D005365 6.9e-07 57.4 38 68.4
AL3G32270 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 9.0e-07 57.0 50 52.0
BraA08t32393Z Brassica rapa HOM05D004588 ORTHO05D005365 9.0e-07 57.0 29 86.2
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 9.0e-07 57.0 31 80.6
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 9.0e-07 57.0 31 80.6
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 9.0e-07 57.0 31 80.6
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 9.0e-07 57.0 37 67.6
AT3G18880 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 1.2e-06 56.6 32 75.0
BcaNung06952 Brassica carinata HOM05D004588 ORTHO05D005365 1.2e-06 56.6 40 62.5
A05p30670 Brassica napus HOM05D004588 ORTHO05D005365 1.2e-06 56.6 40 62.5
A08p04010 Brassica napus HOM05D004588 ORTHO05D005365 1.2e-06 56.6 31 80.6
C05p46550 Brassica napus HOM05D004588 ORTHO05D005365 1.2e-06 56.6 40 62.5
BolC5t33384H Brassica oleracea HOM05D004588 ORTHO05D005365 1.2e-06 56.6 40 62.5
BraA05t21909Z Brassica rapa HOM05D004588 ORTHO05D005365 1.2e-06 56.6 40 62.5
BraA08t32429Z Brassica rapa HOM05D004588 ORTHO05D005365 1.2e-06 56.6 31 80.6
CARHR039400 Cardamine hirsuta HOM05D004588 ORTHO05D005365 1.2e-06 56.6 32 75.0
Thhalv10021804m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 1.2e-06 56.6 32 75.0
FAN04G2398 Fragaria x ananassa HOM05D004588 ORTHO05D005365 3.4e-06 55.1 33 72.7
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 5.8e-06 54.3 31 74.2
BcaB06g25942 Brassica carinata HOM05D004588 ORTHO05D005365 7.6e-06 53.9 32 71.9
Oeu036964.1 Olea europaea HOM05D004588 ORTHO05D005365 9.9e-06 53.5 41 58.5


User provided reference genes

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