Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 4.6e-258 894.0 454 100.0
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 4.1e-230 801.2 455 89.5
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.8e-208 726.9 457 80.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 3.2e-206 721.8 458 80.8
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 7.8e-205 717.2 464 79.5
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.7e-204 716.1 459 80.8
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.3e-204 715.7 457 81.0
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.1e-203 713.4 477 81.1
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 5.6e-203 711.1 457 79.9
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 9.5e-203 710.3 457 79.9
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.6e-202 708.4 457 79.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 5.2e-201 704.5 463 79.5
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.6e-200 702.2 457 79.2
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 5.8e-200 701.0 478 79.5
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.3e-199 699.9 459 78.2
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 2.4e-198 695.7 452 79.2
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.0e-196 690.3 456 77.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.7e-196 689.5 456 77.4
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.3e-195 684.9 460 76.3
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 8.1e-194 680.6 460 76.1
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.4e-193 679.1 457 76.1
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 8.9e-193 677.2 460 76.1
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 9.9e-192 673.7 456 76.1
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.3e-191 673.3 460 75.9
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 2.9e-191 672.2 460 75.9
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 6.4e-191 671.0 462 75.5
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 8.4e-191 670.6 473 74.4
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 3.2e-190 668.7 457 75.9
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 5.4e-190 667.9 438 79.0
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.1e-189 666.0 456 75.0
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.1e-187 660.2 465 73.8
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.5e-187 659.8 457 74.8
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.5e-187 659.1 457 74.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 5.6e-187 657.9 458 74.5
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 6.2e-186 654.4 457 74.2
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 4.0e-185 651.7 457 72.6
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 9.0e-185 650.6 475 72.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.2e-184 650.2 456 74.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 2.6e-184 649.0 456 74.3
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 7.6e-184 647.5 458 73.4
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 7.6e-184 647.5 457 72.9
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 4.9e-183 644.8 451 74.5
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 8.4e-183 644.0 458 73.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.1e-182 643.7 439 75.9
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 3.2e-182 642.1 457 74.4
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 3.2e-182 642.1 458 72.9
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 7.8e-181 637.5 450 73.6
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.0e-180 637.1 450 72.9
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.7e-180 636.3 457 72.0
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.3e-180 636.0 459 73.0
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 5.1e-180 634.8 456 71.9
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 3.3e-179 632.1 455 71.4
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 7.3e-179 630.9 472 71.8
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 7.3e-179 630.9 451 72.1
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.6e-178 629.8 536 62.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.6e-178 629.8 492 67.9
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 6.2e-178 627.9 449 71.7
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.4e-177 626.7 458 71.2
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.8e-177 626.3 457 71.1
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.4e-177 625.9 441 74.6
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 5.3e-177 624.8 458 70.7
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 6.9e-177 624.4 486 68.1
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 9.0e-177 624.0 458 70.5
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.2e-176 623.6 447 73.6
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 5.8e-176 621.3 456 72.1
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 7.6e-176 620.9 450 70.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 7.6e-176 620.9 456 70.4
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-175 619.4 458 69.7
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 2.2e-175 619.4 458 70.1
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 3.8e-175 618.6 452 70.6
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.9e-175 618.2 459 70.4
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.9e-174 616.3 450 70.4
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.9e-174 616.3 458 70.1
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.4e-174 615.9 430 74.4
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 3.2e-174 615.5 450 70.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.2e-173 613.6 458 70.1
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 3.5e-173 612.1 428 74.5
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 4.6e-173 611.7 454 71.4
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-172 609.8 450 69.8
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 8.7e-172 607.4 450 72.2
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.5e-171 606.7 455 70.8
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.5e-171 606.7 455 70.8
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.9e-171 606.3 455 70.5
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.3e-170 603.6 451 69.6
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.3e-170 603.6 451 69.8
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 4.8e-170 601.7 453 71.3
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-169 600.5 451 71.0
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.1e-169 600.5 449 71.3
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.4e-169 600.1 447 70.2
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.1e-169 599.0 457 69.6
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 9.0e-169 597.4 453 70.9
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.0e-168 596.3 448 69.0
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 4.9e-167 591.7 450 70.7
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-166 590.5 453 70.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.9e-166 589.7 424 70.8
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 4.6e-165 585.1 443 68.8
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 6.0e-165 584.7 450 69.8
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.0e-164 583.9 443 68.8
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.3e-164 583.6 455 66.8
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.8e-164 583.2 455 66.4
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.0e-164 582.4 460 68.0
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.0e-164 582.4 454 67.8
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 8.7e-164 580.9 455 67.0
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.5e-163 580.1 447 67.3
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.5e-163 580.1 455 66.6
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.9e-163 579.7 455 66.8
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.5e-163 579.3 420 72.9
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.3e-163 578.6 456 67.1
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 9.6e-163 577.4 447 67.6
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.4e-161 572.8 452 69.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 3.4e-160 568.9 460 66.7
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.9e-158 563.1 450 68.2
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.2e-158 562.4 450 68.0
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 2.8e-154 549.3 450 68.9
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 4.8e-154 548.5 449 64.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.1e-153 547.4 450 68.7
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 7.6e-152 541.2 516 57.4
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.0e-151 540.8 438 66.2
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 7.9e-149 531.2 420 68.1
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.9e-147 526.6 465 62.6
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 3.7e-146 522.3 418 66.3
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.1e-145 517.7 429 62.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 4.5e-144 515.4 446 62.6
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.5e-142 509.6 453 62.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.2e-141 507.3 427 65.3
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 6.7e-140 501.5 454 60.8
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.8e-135 485.7 412 63.6
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 7.4e-131 471.5 514 54.3
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.1e-129 467.6 323 75.9
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.8e-129 466.8 290 81.7
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.5e-126 455.3 432 56.5
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.5e-126 455.3 395 62.0
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 9.1e-121 438.0 495 51.9
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 2.2e-119 433.3 341 67.7
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 2.1e-117 426.8 447 54.8
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 5.2e-108 395.6 461 51.4
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 8.6e-103 378.3 457 49.7
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.3e-102 375.2 279 68.5
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.4e-92 344.4 319 59.2
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.7e-87 327.4 343 57.7
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.8e-84 317.4 195 81.5
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 6.0e-80 302.4 457 43.3
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 8.6e-79 298.5 289 59.9
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.1e-77 293.9 195 75.9
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 3.4e-75 286.6 328 50.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.1e-73 281.6 219 67.1
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 2.1e-72 277.3 261 60.9
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.1e-72 277.3 194 69.1
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.7e-71 274.2 526 37.3
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 7.3e-70 268.9 203 70.4
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 8.4e-66 255.4 185 74.1
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 3.3e-62 243.4 158 79.1
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 6.9e-60 235.7 239 60.3
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 8.7e-55 218.8 129 82.9
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.2e-51 208.4 170 60.0
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.8e-51 206.1 296 46.3
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 5.8e-51 206.1 218 52.8
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.7e-50 204.5 122 83.6
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.8e-44 184.5 136 66.2
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 5.5e-41 172.9 300 38.0
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.6e-40 169.9 364 35.7
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.5e-35 154.8 168 50.0
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 8.5e-34 149.1 302 35.1
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.9e-31 140.2 155 52.9
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 8.8e-31 139.0 102 66.7
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 3.4e-27 127.1 120 63.3
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.0e-26 125.6 154 53.2
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.0e-26 125.6 76 77.6
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.3e-26 125.2 79 84.8
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 3.3e-22 110.5 126 55.6
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 5.7e-22 109.8 113 60.2
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 8.2e-21 105.9 74 73.0
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 2.8e-13 80.9 110 48.2
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.7e-13 80.5 52 80.8
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 9.1e-12 75.9 52 69.2
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.2e-11 75.5 42 85.7
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 7.7e-11 72.8 51 70.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.9e-10 70.9 63 57.1
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 2.1e-08 64.7 111 47.7
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 3.6e-08 63.9 112 44.6
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.3e-07 61.2 77 50.6
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.0e-06 58.2 36 69.4


User provided reference genes

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