Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 3.9e-137 491.5 256 100.0
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.3e-108 396.7 251 84.1
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.2e-100 369.4 256 80.1
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.6e-98 362.1 253 79.4
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.0e-96 356.3 256 77.7
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 5.7e-96 354.8 256 77.3
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.7e-92 343.2 257 74.3
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 3.8e-92 342.0 257 74.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 5.0e-92 341.7 250 75.2
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.9e-91 339.7 259 73.0
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 5.5e-91 338.2 247 73.3
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 2.8e-90 335.9 247 72.5
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 6.1e-90 334.7 259 71.8
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 8.0e-90 334.3 195 87.2
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.4e-89 333.6 219 79.9
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.8e-89 333.2 258 70.9
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 3.0e-89 332.4 254 74.8
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 5.2e-89 331.6 265 69.4
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.6e-88 329.3 205 82.0
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 4.4e-88 328.6 195 87.7
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 5.7e-88 328.2 196 84.7
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 5.7e-88 328.2 256 72.7
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 7.5e-88 327.8 259 70.7
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 9.8e-88 327.4 255 71.8
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.3e-87 327.0 242 71.9
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.2e-87 326.2 260 70.0
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.8e-87 325.9 252 73.4
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 3.7e-87 325.5 246 74.0
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 6.3e-87 324.7 196 84.7
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 8.3e-87 324.3 255 71.8
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.8e-86 323.2 258 72.1
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.8e-86 323.2 258 70.9
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.8e-86 323.2 260 69.6
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.4e-86 322.8 193 86.0
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.1e-86 322.4 220 77.7
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 3.1e-86 322.4 252 72.6
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.1e-86 322.4 240 73.8
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 5.4e-86 321.6 256 71.1
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 7.0e-86 321.2 256 70.3
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.2e-86 320.9 260 70.4
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 9.2e-86 320.9 256 72.3
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 9.2e-86 320.9 244 71.3
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.2e-85 320.5 265 68.7
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 1.6e-85 320.1 254 70.9
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 2.0e-85 319.7 195 83.6
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 2.0e-85 319.7 251 70.9
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 2.0e-85 319.7 265 69.1
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 2.7e-85 319.3 247 70.9
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 4.5e-85 318.5 254 69.3
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 4.5e-85 318.5 241 72.2
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 5.9e-85 318.2 265 68.3
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 7.8e-85 317.8 258 70.9
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 1.3e-84 317.0 218 76.6
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 1.3e-84 317.0 243 70.4
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.7e-84 316.6 244 71.3
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.7e-84 316.6 214 79.0
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.8e-84 315.5 262 70.6
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 3.8e-84 315.5 252 70.6
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 5.0e-84 315.1 220 75.0
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 5.0e-84 315.1 256 69.9
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 8.6e-84 314.3 252 69.8
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.1e-83 313.9 220 75.9
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.1e-83 313.9 242 69.8
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 2.5e-83 312.8 198 79.3
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 3.3e-83 312.4 267 66.3
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 3.3e-83 312.4 200 82.5
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 4.3e-83 312.0 255 66.3
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 4.3e-83 312.0 268 66.0
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 4.3e-83 312.0 257 66.5
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 5.6e-83 311.6 201 78.1
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 5.6e-83 311.6 222 75.7
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 5.6e-83 311.6 237 72.2
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.2e-82 310.5 247 69.6
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.2e-82 310.5 249 70.3
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.2e-82 310.5 245 72.2
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.6e-82 310.1 243 69.5
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.1e-82 309.7 259 66.4
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 2.1e-82 309.7 259 66.4
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.1e-82 309.7 261 66.3
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.1e-82 309.7 212 75.5
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 3.6e-82 308.9 255 69.4
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 6.1e-82 308.1 196 81.1
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.8e-81 306.6 257 65.4
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 2.3e-81 306.2 196 81.6
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 2.3e-81 306.2 196 81.6
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 3.0e-81 305.8 265 64.9
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.0e-81 305.8 247 68.4
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 4.0e-81 305.4 222 74.3
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 8.9e-81 304.3 261 64.8
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.5e-80 303.5 254 67.3
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.6e-80 302.8 201 77.6
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 3.4e-80 302.4 259 66.0
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.4e-80 302.4 258 65.5
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.4e-80 302.0 245 68.2
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 5.8e-80 301.6 218 73.4
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 7.5e-80 301.2 245 68.6
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.7e-79 300.1 267 63.3
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 6.4e-79 298.1 193 79.8
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 6.4e-79 298.1 242 70.2
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 5.4e-78 295.0 198 76.8
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 9.2e-78 294.3 317 58.7
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.2e-77 293.9 192 78.1
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 7.8e-77 291.2 323 56.3
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 3.9e-76 288.9 199 73.9
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 2.8e-74 282.7 260 63.5
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 3.7e-71 272.3 193 67.4
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.1e-65 252.7 179 76.5
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.4e-62 243.8 204 58.8
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 9.2e-62 241.1 246 58.5
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.5e-61 239.2 192 63.5
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.6e-58 230.3 226 58.4
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 2.1e-58 229.9 231 61.0
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.2e-56 224.2 178 64.0
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.6e-56 223.0 211 62.1
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.9e-55 219.5 178 63.5
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 2.7e-53 213.0 180 56.7
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 4.6e-53 212.2 181 60.8
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.3e-52 210.7 157 66.2
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 9.6e-51 204.5 113 92.9
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 1.5e-48 197.2 213 54.5
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 3.0e-44 183.0 238 44.1
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.1e-41 174.5 186 53.8
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 1.5e-32 144.1 231 38.1
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 4.6e-29 132.5 138 58.0
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 2.5e-27 126.7 98 71.4
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 8.2e-26 121.7 148 52.0
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.1e-25 119.8 190 40.5
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 7.6e-24 115.2 81 69.1
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 4.5e-16 89.4 57 78.9
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.0e-15 88.2 53 83.0
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.2e-08 64.7 48 60.4
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.0e-07 61.6 87 48.3
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 2.2e-07 60.5 39 74.4
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 2.2e-07 60.5 40 67.5
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 5.0e-07 59.3 94 39.4
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 6.5e-07 58.9 176 30.7


User provided reference genes

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