Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.0e-284 981.1 473 100.0
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.7e-247 859.0 474 86.9
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 8.0e-237 823.5 474 83.3
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 8.3e-234 813.5 476 82.8
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.8e-221 771.9 476 76.9
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 4.7e-221 771.2 476 79.0
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.3e-218 763.1 478 77.6
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.7e-218 762.7 524 73.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 5.4e-217 757.7 476 78.6
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 9.2e-217 756.9 476 75.6
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 4.6e-216 754.6 476 78.4
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 5.1e-215 751.1 480 75.6
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.5e-214 749.6 480 76.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.3e-214 748.0 478 74.7
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 7.3e-214 747.3 479 75.8
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.6e-213 746.1 483 76.2
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 8.1e-213 743.8 481 75.1
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 4.0e-212 741.5 481 75.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.2e-211 740.0 478 76.8
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.0e-211 739.2 482 74.1
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 3.4e-211 738.4 477 74.2
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.8e-211 737.6 483 75.2
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 9.9e-211 736.9 484 75.0
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 9.9e-211 736.9 481 75.9
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 6.4e-210 734.2 476 73.1
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 3.2e-209 731.9 479 74.3
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 4.2e-209 731.5 480 74.0
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 7.1e-209 730.7 481 73.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.2e-208 729.9 482 75.9
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.3e-207 725.7 476 73.7
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 2.3e-207 725.7 479 75.6
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 5.1e-207 724.5 474 73.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 7.3e-206 720.7 482 73.9
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.3e-206 720.7 479 75.4
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-205 719.5 479 75.4
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.8e-205 718.8 479 74.9
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 4.8e-205 718.0 484 73.6
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 6.2e-205 717.6 480 74.6
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.8e-204 716.1 479 75.2
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.6e-203 712.2 478 74.1
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 3.4e-203 711.8 478 72.6
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 9.3e-201 703.7 488 73.4
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.7e-200 702.2 478 70.5
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 6.0e-200 701.0 482 71.6
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.0e-199 698.7 518 69.7
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 3.0e-199 698.7 502 67.3
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 5.1e-199 698.0 488 69.7
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 8.7e-199 697.2 480 70.2
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.9e-198 696.0 477 69.4
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 4.3e-198 694.9 519 65.7
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 5.6e-198 694.5 476 70.0
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.4e-198 694.1 487 70.0
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 7.4e-198 694.1 480 71.7
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.6e-197 693.0 516 69.4
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 3.7e-197 691.8 545 63.7
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 3.7e-197 691.8 482 69.9
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 4.8e-197 691.4 436 75.7
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.1e-196 690.3 520 65.6
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.4e-196 689.9 520 65.8
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 3.1e-196 688.7 520 65.4
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 5.3e-196 688.0 483 68.9
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.9e-196 687.6 499 70.5
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.2e-195 686.8 480 69.6
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 4.5e-195 684.9 483 69.6
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.7e-194 682.9 483 68.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 8.4e-194 680.6 482 69.1
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 5.5e-193 677.9 482 68.9
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.6e-192 674.9 478 70.3
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 7.9e-192 674.1 480 69.0
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.0e-191 673.7 480 70.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.3e-191 672.5 499 66.1
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.1e-190 670.2 481 68.2
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.3e-189 666.8 520 63.5
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.1e-189 666.0 479 67.8
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.1e-189 666.0 388 82.7
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 8.2e-189 664.1 484 69.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.4e-188 663.3 521 63.5
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.7e-186 656.4 437 74.8
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.5e-185 652.5 481 66.1
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 3.2e-185 652.1 481 65.7
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 4.2e-185 651.7 438 71.7
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 3.5e-184 648.7 474 67.1
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 6.0e-184 647.9 482 65.1
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.3e-183 646.7 543 60.6
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.6e-181 639.8 484 64.7
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.8e-180 636.3 476 65.8
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.2e-179 633.6 474 65.6
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.0e-179 632.9 486 64.8
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.0e-179 632.9 489 66.9
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.3e-178 630.2 479 65.3
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.1e-177 627.1 475 65.7
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.5e-177 625.9 438 69.6
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 7.2e-177 624.4 476 65.8
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.2e-176 623.6 487 64.3
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.6e-176 623.2 482 64.9
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 2.7e-176 622.5 482 64.9
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.7e-176 622.5 390 76.7
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.0e-175 620.5 433 73.9
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 5.1e-175 618.2 486 64.6
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 5.1e-175 618.2 482 64.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 9.7e-174 614.0 481 64.7
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.7e-173 613.2 390 75.6
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.2e-173 612.8 481 64.7
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.8e-173 611.7 474 63.3
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 8.2e-173 610.9 479 64.3
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.5e-171 606.7 475 62.7
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.0e-171 606.3 408 74.0
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.4e-171 605.5 474 62.9
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.3e-170 603.6 480 63.5
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.3e-170 603.6 387 75.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.5e-169 599.4 477 62.1
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.2e-169 599.0 477 61.8
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 7.2e-169 597.8 481 63.0
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 3.6e-168 595.5 481 61.1
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 3.6e-168 595.5 481 61.1
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 6.3e-165 584.7 480 60.2
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 4.2e-161 572.0 440 68.4
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.2e-155 553.9 440 63.4
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.2e-154 549.7 492 55.9
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.2e-154 549.7 498 55.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.1e-153 547.4 395 67.8
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.8e-151 540.0 349 76.8
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 3.0e-151 539.3 289 86.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.4e-150 535.4 409 66.5
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.8e-149 532.7 468 58.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.3e-149 531.6 512 52.5
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 8.5e-146 521.2 283 85.2
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.2e-144 517.3 431 58.7
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.5e-137 493.8 465 54.6
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 5.2e-135 485.3 480 52.7
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.8e-133 479.6 287 76.7
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.1e-132 475.7 306 69.6
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.6e-123 447.2 290 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 6.6e-114 415.2 528 44.5
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.6e-114 414.8 399 51.6
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.1e-113 414.5 287 65.5
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 7.3e-113 411.8 553 42.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.2e-108 394.8 306 64.4
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 6.2e-104 382.1 473 42.7
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.8e-103 380.6 304 58.2
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 3.1e-103 379.8 536 41.4
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.7e-96 355.9 299 62.9
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 3.3e-89 333.2 372 50.0
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 9.0e-71 271.9 205 64.9
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 7.6e-70 268.9 429 39.4
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.8e-63 247.7 218 61.9
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.9e-51 205.7 179 59.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 4.4e-49 199.9 239 52.7
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.4e-44 182.2 153 64.1
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-41 175.3 144 61.1
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-41 175.3 144 61.1
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.4e-39 168.3 188 53.2
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-39 167.5 95 82.1
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.1e-39 165.6 93 82.8
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.2e-38 165.2 135 63.0
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.9e-37 160.6 93 79.6
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 8.5e-37 159.1 127 55.9
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 7.2e-36 156.0 109 71.6
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.6e-35 154.8 179 48.0
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-33 148.7 86 77.9
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-33 148.7 86 77.9
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 4.5e-30 136.7 137 53.3
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.2e-29 134.4 185 47.0
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 2.9e-29 134.0 189 44.4
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 2.3e-18 97.8 63 73.0
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 9.5e-12 75.9 44 77.3


User provided reference genes

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