Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G086906 Manihot esculenta HOM05D004673 ORTHO05D005596 1.9e-132 476.9 475 100.0
Potri.001G003200 Populus trichocarpa HOM05D004673 ORTHO05D005596 3.3e-73 280.0 463 78.4
Atru.chr1.2923 Acer truncatum HOM05D004673 ORTHO05D005596 7.2e-68 262.3 477 73.6
TAR623G1034 Trochodendron aralioides HOM05D004673 ORTHO05D005596 4.1e-63 246.5 470 74.3
CSS0005892 Camellia sinensis var. sinensis HOM05D004673 ORTHO05D005596 3.0e-58 230.3 478 73.6
Cc01_g00160 Coffea canephora HOM05D004673 ORTHO05D005596 5.2e-58 229.6 481 71.3
CsaV3_1G041610 Cucumis sativus L. HOM05D004673 ORTHO05D005596 1.5e-57 228.0 481 71.9
ClCG03G014570 Citrullus lanatus HOM05D004673 ORTHO05D005596 7.4e-57 225.7 468 71.2
TWI60G0809 Tripterygium wilfordii HOM05D004673 ORTHO05D005596 1.1e-55 221.9 440 74.5
Lsat_1_v5_gn_6_55581 Lactuca sativa HOM05D004673 ORTHO05D005596 2.0e-54 217.6 457 74.4
MELO3C015571.2 Cucumis melo HOM05D004673 ORTHO05D005596 2.2e-53 214.2 482 72.2
Sabra01G0002300 Salix brachista HOM05D004673 ORTHO05D005596 3.2e-52 210.3 346 73.4
Prupe.7G003900 Prunus persica HOM05D004673 ORTHO05D005596 9.4e-52 208.8 463 69.8
Lsat_1_v5_gn_1_25861 Lactuca sativa HOM05D004673 ORTHO05D005596 3.6e-51 206.8 461 66.2
QL02p096023 Quercus lobata HOM05D004673 ORTHO05D005596 4.7e-51 206.5 445 73.3
Lsat_1_v5_gn_6_55380 Lactuca sativa HOM05D004673 ORTHO05D005596 1.8e-50 204.5 467 71.5
Cfa009556 Carpinus fangiana HOM05D004673 ORTHO05D005596 6.7e-50 202.6 479 69.1
Sed0024334 Sechium edule HOM05D004673 ORTHO05D005596 9.7e-49 198.7 477 71.3
Peaxi162Scf00705g00063 Petunia axillaris HOM05D004673 ORTHO05D005596 1.3e-48 198.4 430 74.9
Dinv13478 Davidia involucrata HOM05D004673 ORTHO05D005596 1.4e-47 194.9 324 79.0
CANSAT11G1431 Cannabis sativa HOM05D004673 ORTHO05D005596 4.1e-47 193.4 482 66.8
CAN.G1834.13 Capsicum annuum HOM05D004673 ORTHO05D005596 2.7e-46 190.7 444 74.8
Lsat_1_v5_gn_6_53540 Lactuca sativa HOM05D004673 ORTHO05D005596 3.5e-46 190.3 466 68.9
QL02p095991 Quercus lobata HOM05D004673 ORTHO05D005596 1.7e-45 188.0 445 71.7
Hma1.2p1_0589F.1_g184830 Hydrangea macrophylla HOM05D004673 ORTHO05D005596 6.5e-45 186.0 478 65.3
DCAR_030109 Daucus carota HOM05D004673 ORTHO05D005596 7.2e-44 182.6 472 64.6
Lsat_1_v5_gn_6_55460 Lactuca sativa HOM05D004673 ORTHO05D005596 6.1e-43 179.5 468 64.5
ECA233G4672 Erigeron canadensis HOM05D004673 ORTHO05D005596 3.0e-42 177.2 458 65.7
Ciclev10024612m.g Citrus clementina HOM05D004673 ORTHO05D005596 6.8e-42 176.0 470 71.5
MBI11_g38090_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 3.4e-41 173.7 473 70.4
QL01p003522 Quercus lobata HOM05D000182 ORTHO05D005596 5.7e-41 172.9 454 48.9
Aqoxy1G00488 Aquilegia oxysepala HOM05D004673 ORTHO05D005596 2.2e-40 171.0 449 69.7
DCAR_032195 Daucus carota HOM05D004673 ORTHO05D005596 2.2e-40 171.0 322 70.8
Nitab4.5_0000551g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 2.4e-39 167.5 347 66.6
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 3.5e-38 163.7 480 68.3
Ciclev10018053m.g Citrus clementina HOM05D004673 ORTHO05D005596 4.5e-38 163.3 390 76.2
Nitab4.5_0006195g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 5.9e-38 162.9 328 69.2
C03p40670 Brassica napus HOM05D004673 ORTHO05D005596 2.3e-37 161.0 470 63.0
DCAR_030099 Daucus carota HOM05D004673 ORTHO05D005596 2.9e-37 160.6 461 67.0
Haze_22936 Corylus avellana HOM05D004673 ORTHO05D005596 3.3e-36 157.1 227 69.6
BolC3t16332H Brassica oleracea HOM05D004673 ORTHO05D005596 9.5e-36 155.6 451 64.5
DCAR_030100 Daucus carota HOM05D004673 ORTHO05D005596 4.7e-35 153.3 470 41.5
DCAR_013113 Daucus carota HOM05D004673 ORTHO05D005596 1.4e-34 151.8 451 64.1
AUR62032055 Chenopodium quinoa HOM05D004673 ORTHO05D005596 6.8e-34 149.4 445 67.0
COL.COLO4_13599 Corchorus olitorius HOM05D004673 ORTHO05D005596 6.8e-34 149.4 318 71.4
BraA03t12522Z Brassica rapa HOM05D004673 ORTHO05D005596 5.7e-33 146.4 471 64.1
Thecc.05G294400 Theobroma cacao HOM05D004673 ORTHO05D005596 9.8e-33 145.6 317 70.7
Rhsim13G0233200 Rhododendron simsii HOM05D004673 ORTHO05D005596 4.1e-31 140.2 462 69.3
A03p33470 Brassica napus HOM05D004673 ORTHO05D005596 2.0e-30 137.9 471 63.1
Actinidia00906 Actinidia chinensis HOM05D004673 ORTHO05D005596 2.7e-30 137.5 191 74.3
DCAR_030101 Daucus carota HOM05D004673 ORTHO05D005596 4.5e-30 136.7 321 51.1
DCAR_030114 Daucus carota HOM05D004673 ORTHO05D005596 7.8e-30 136.0 451 62.5
QL01p004573 Quercus lobata HOM05D004673 ORTHO05D005596 1.7e-29 134.8 468 66.5
Gohir.A11G259500 Gossypium hirsutum HOM05D004673 ORTHO05D005596 5.0e-29 133.3 313 70.0
QL01p003771 Quercus lobata HOM05D004673 ORTHO05D005596 1.1e-28 132.1 453 62.5
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 4.3e-28 130.2 240 54.6
CARHR253220 Cardamine hirsuta HOM05D004673 ORTHO05D005596 7.3e-28 129.4 463 64.8
EL10Ac3g06819 Beta vulgaris HOM05D004673 ORTHO05D005596 9.5e-28 129.0 207 67.6
Carub.0006s3213 Capsella rubella HOM05D004673 ORTHO05D005596 3.0e-26 124.0 464 44.6
DCAR_030110 Daucus carota HOM05D004673 ORTHO05D005596 3.0e-26 124.0 315 62.5
DCAR_030112 Daucus carota HOM05D004673 ORTHO05D005596 4.0e-26 123.6 319 60.8
QL01p016358 Quercus lobata HOM05D004673 ORTHO05D005596 1.5e-25 121.7 227 61.2
QL01p016345 Quercus lobata HOM05D004673 ORTHO05D005596 2.0e-25 121.3 228 60.1
QL01p004480 Quercus lobata HOM05D004673 ORTHO05D005596 4.4e-25 120.2 227 62.6
ECA233G4485 Erigeron canadensis HOM05D004673 ORTHO05D005596 5.8e-25 119.8 309 65.0
Gorai.007G289600 Gossypium raimondii HOM05D004673 ORTHO05D005596 2.2e-24 117.9 200 66.5
DCAR_030979 Daucus carota HOM05D004673 ORTHO05D005596 6.4e-24 116.3 190 66.8
DCAR_030102 Daucus carota HOM05D004673 ORTHO05D005596 8.3e-24 115.9 202 63.9
THA.LOC104816063 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 4.1e-23 113.6 181 72.9
DCAR_030108 Daucus carota HOM05D004673 ORTHO05D005596 5.4e-23 113.2 200 64.5
Dinv00554 Davidia involucrata HOM05D004673 ORTHO05D005596 9.2e-23 112.5 322 66.5
BcaB04g19351 Brassica carinata HOM05D004673 ORTHO05D005596 3.5e-22 110.5 220 58.6
Carub.0003s0318 Capsella rubella HOM05D004673 ORTHO05D005596 3.5e-22 110.5 455 57.6
QL08p003602 Quercus lobata HOM05D004673 ORTHO05D005596 4.6e-22 110.2 317 61.5
Aa31LG5G14520 Aethionema arabicum HOM05D004673 ORTHO05D005596 1.0e-21 109.0 210 62.4
CARHR078050 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.7e-21 108.2 474 61.4
Dinv09263 Davidia involucrata HOM05D004673 ORTHO05D005596 1.7e-21 108.2 198 66.2
HanXRQChr13g0405711 Helianthus annuus HOM05D004673 ORTHO05D005596 8.6e-21 105.9 462 56.5
HanXRQChr13g0405741 Helianthus annuus HOM05D004673 ORTHO05D005596 3.3e-20 104.0 462 48.7
CsaV3_1G041620 Cucumis sativus L. HOM05D004673 ORTHO05D005596 9.5e-20 102.4 232 59.5
QL01p004552 Quercus lobata HOM05D004673 ORTHO05D005596 1.2e-19 102.1 210 61.0
BcaB07g31134 Brassica carinata HOM05D004673 ORTHO05D005596 1.6e-19 101.7 480 59.0
MELO3C015573.2 Cucumis melo HOM05D004673 ORTHO05D005596 1.6e-19 101.7 233 57.9
ATR0697G215 Amborella trichopoda HOM05D004673 ORTHO05D005596 2.1e-19 101.3 315 63.8
Cpa.g.c34637 Carica papaya HOM05D004673 ORTHO05D005596 2.3e-18 97.8 181 68.5
QL08p003638 Quercus lobata HOM05D004673 ORTHO05D005596 2.3e-18 97.8 205 62.4
Sp3g02900 Schrenkiella parvula HOM05D004673 ORTHO05D005596 3.1e-18 97.4 202 63.4
AUR62032689 Chenopodium quinoa HOM05D000750 ORTHO05D000714 6.8e-18 96.3 358 41.6
CARHR253280 Cardamine hirsuta HOM05D004673 ORTHO05D005596 8.9e-18 95.9 328 55.2
Cpa.g.sc1158.1 Carica papaya HOM05D004673 ORTHO05D005596 1.5e-17 95.1 174 69.5
DCAR_030125 Daucus carota HOM05D004673 ORTHO05D005596 1.5e-17 95.1 171 71.9
GSVIVG01025477001 Vitis vinifera HOM05D004673 ORTHO05D005596 2.0e-17 94.7 97 51.5
COL.COLO4_13601 Corchorus olitorius HOM05D000750 ORTHO05D000714 4.4e-17 93.6 456 44.5
DCAR_030115 Daucus carota HOM05D004673 ORTHO05D005596 4.4e-17 93.6 146 80.1
THA.LOC104821143 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 5.8e-17 93.2 190 66.8
CARHR253250 Cardamine hirsuta HOM05D004673 ORTHO05D005596 7.5e-17 92.8 199 62.3
AT4G04220 Arabidopsis thaliana HOM05D004673 ORTHO05D005596 1.7e-16 91.7 321 54.2
HanXRQChr07g0187111 Helianthus annuus HOM05D004673 ORTHO05D005596 1.7e-16 91.7 184 63.0
Aa31LG5G14510 Aethionema arabicum HOM05D004673 ORTHO05D005596 2.2e-16 91.3 174 67.2
HPP92_013962 Vanilla planifolia HOM05D004673 ORTHO05D005596 2.9e-16 90.9 196 61.7
AL6G47840 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 3.7e-16 90.5 200 61.0
QL08p055485 Quercus lobata HOM05D004673 ORTHO05D005596 3.7e-16 90.5 64 60.9
ECA233G2517 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-16 90.1 186 66.7
HPP92_013964 Vanilla planifolia HOM05D004673 ORTHO05D005596 4.1e-15 87.0 186 61.8
Thhalv10027707m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 9.2e-15 85.9 183 62.3
CARHR253370 Cardamine hirsuta HOM05D004673 ORTHO05D005596 3.5e-14 84.0 195 60.0
GSVIVG01025484001 Vitis vinifera HOM05D004673 ORTHO05D005596 4.6e-14 83.6 58 62.1
QL01p004463 Quercus lobata HOM05D004673 ORTHO05D005596 1.0e-13 82.4 69 52.2
Lj1P522T31 Lonicera japonica HOM05D004673 ORTHO05D005596 1.3e-13 82.0 99 48.5
HPP92_013963 Vanilla planifolia HOM05D004673 ORTHO05D005596 1.3e-13 82.0 202 58.9
QL01p004071 Quercus lobata HOM05D004673 ORTHO05D005596 6.6e-13 79.7 180 60.6
CARHR253180 Cardamine hirsuta HOM05D004673 ORTHO05D005596 8.6e-13 79.3 187 55.6
CARHR253290 Cardamine hirsuta HOM05D004673 ORTHO05D005596 5.6e-12 76.6 157 71.3
Sabra01G0002200 Salix brachista HOM05D004673 ORTHO05D005596 1.2e-11 75.5 47 70.2
Lj2P776T43 Lonicera japonica HOM05D004673 ORTHO05D005596 2.1e-11 74.7 91 44.0
DCAR_030118 Daucus carota HOM05D004673 ORTHO05D005596 8.1e-11 72.8 206 40.3
HanXRQChr07g0187541 Helianthus annuus HOM05D004673 ORTHO05D005596 2.3e-10 71.2 63 52.4
Lj1P521T7 Lonicera japonica HOM05D004673 ORTHO05D005596 3.1e-10 70.9 59 57.6
COL.COLO4_13600 Corchorus olitorius HOM05D004673 ORTHO05D005596 4.0e-10 70.5 83 47.0
HPP92_013960 Vanilla planifolia HOM05D004673 ORTHO05D005596 4.0e-10 70.5 64 46.9
BcaC01g04387 Brassica carinata HOM05D004673 ORTHO05D005596 1.2e-09 68.9 67 49.3
CARHR253240 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.2e-09 68.9 325 59.4
Dinv00553 Davidia involucrata HOM05D004673 ORTHO05D005596 1.2e-09 68.9 66 50.0
Dinv09265 Davidia involucrata HOM05D004673 ORTHO05D005596 1.5e-09 68.6 159 32.1
QL07p015672 Quercus lobata HOM05D004673 ORTHO05D005596 2.0e-09 68.2 43 72.1
CARHR253200 Cardamine hirsuta HOM05D004673 ORTHO05D005596 4.4e-09 67.0 65 55.4
DCAR_030126 Daucus carota HOM05D004673 ORTHO05D005596 2.2e-08 64.7 141 74.5
BraA05t20720Z Brassica rapa HOM05D000054 ORTHO05D000171 2.9e-08 64.3 64 42.2
A05p18250 Brassica napus HOM05D000054 ORTHO05D000171 3.7e-08 63.9 64 42.2
ECA240G1657 Erigeron canadensis HOM05D004673 ORTHO05D005596 4.9e-08 63.5 177 62.7
EL10Ac3g05146 Beta vulgaris HOM05D000071 ORTHO05D000029 1.4e-07 62.0 61 44.3
CiPaw.12G111500 Carya illinoinensis HOM05D000054 ORTHO05D000171 7.1e-07 59.7 64 42.2
AUR62035590 Chenopodium quinoa HOM05D000071 ORTHO05D000029 7.1e-07 59.7 60 41.7
Cc11_g07420 Coffea canephora HOM05D000071 ORTHO05D000029 7.1e-07 59.7 77 40.3
C09p23810 Brassica napus HOM05D004673 ORTHO05D005596 9.2e-07 59.3 75 42.7
BolC9t55304H Brassica oleracea HOM05D004673 ORTHO05D005596 9.2e-07 59.3 75 42.7
HanXRQChr07g0187551 Helianthus annuus HOM05D004673 ORTHO05D005596 1.2e-06 58.9 71 42.3
Rhsim03G0025800 Rhododendron simsii HOM05D000071 ORTHO05D000029 2.1e-06 58.2 57 42.1
TWI09G1120 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 2.7e-06 57.8 63 41.3
CANSAT11G1388 Cannabis sativa HOM05D000054 ORTHO05D010247 3.5e-06 57.4 58 44.8
CANSAT80G0308 Cannabis sativa HOM05D000054 ORTHO05D010247 3.5e-06 57.4 58 44.8
Lsat_1_v5_gn_5_94140 Lactuca sativa HOM05D000071 ORTHO05D000029 3.5e-06 57.4 55 43.6
vmacro06677 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 3.5e-06 57.4 57 42.1
AUR62006036 Chenopodium quinoa HOM05D000071 ORTHO05D000029 4.6e-06 57.0 60 41.7
Lsat_1_v5_gn_5_94020 Lactuca sativa HOM05D000071 ORTHO05D000029 4.6e-06 57.0 57 42.1
AL6G41120 Arabidopsis lyrata HOM05D000426 ORTHO05D005596 6.0e-06 56.6 87 39.1
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 6.0e-06 56.6 64 42.2
Atru.chr2.2015 Acer truncatum HOM05D000054 ORTHO05D000171 7.8e-06 56.2 64 42.2


User provided reference genes

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