Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G086206 Manihot esculenta HOM05D007592 ORTHO05D004645 8.5e-58 226.9 121 100.0
Manes.12G071232 Manihot esculenta HOM05D007592 ORTHO05D004645 5.5e-57 224.2 121 98.3
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 4.7e-56 221.1 120 96.7
Manes.16G106550 Manihot esculenta HOM05D007592 ORTHO05D004645 1.4e-55 219.5 120 96.7
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 2.6e-54 215.3 120 95.0
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 1.3e-53 213.0 120 95.0
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 2.2e-53 212.2 120 93.3
Manes.15G083266 Manihot esculenta HOM05D007592 ORTHO05D004645 3.8e-50 201.4 113 93.8
Manes.13G094101 Manihot esculenta HOM05D007592 ORTHO05D004645 8.5e-42 173.7 120 82.5
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 1.5e-41 172.9 105 86.7
PGSC0003DMG400013032 Solanum tuberosum HOM05D007592 ORTHO05D004645 8.6e-18 94.0 118 42.4
PGSC0003DMG400002254 Solanum tuberosum HOM05D007592 ORTHO05D004645 5.6e-17 91.3 106 44.3
PGSC0003DMG400029060 Solanum tuberosum HOM05D007592 ORTHO05D004645 5.6e-17 91.3 103 45.6
PGSC0003DMG400006215 Solanum tuberosum HOM05D007592 ORTHO05D004645 6.8e-15 84.3 101 43.6
AL2G23940 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.5e-14 83.2 118 42.4
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 2.6e-14 82.4 124 40.3
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 2.6e-14 82.4 124 40.3
Oeu023351.1 Olea europaea HOM05D007592 ORTHO05D004645 2.9e-13 79.0 120 40.8
AL8G44460 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 4.9e-13 78.2 123 41.5
Manes.03G096216 Manihot esculenta HOM05D007592 ORTHO05D004645 1.9e-12 76.3 109 47.7
Ciclev10023655m.g Citrus clementina HOM05D007592 ORTHO05D004645 3.2e-12 75.5 125 36.0
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 4.1e-12 75.1 123 36.6
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.2e-11 73.6 118 36.4
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.6e-11 73.2 122 36.1
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 2.1e-11 72.8 119 42.0
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 4.6e-11 71.6 118 35.6
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 6.0e-11 71.2 125 38.4
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 1.7e-10 69.7 117 40.2
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.7e-10 69.7 123 40.7
PGSC0003DMG400037078 Solanum tuberosum HOM05D008583 ORTHO05D004645 3.9e-10 68.6 57 57.9
AT2G13760 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 5.1e-10 68.2 118 34.7
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 5.1e-10 68.2 119 37.0
SGA_v2.0_scaffold211G42135 Striga asiatica HOM05D007592 ORTHO05D004645 1.1e-09 67.0 116 35.3
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 3.3e-09 65.5 117 37.6
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 5.6e-09 64.7 117 38.5
Atru.chr6.863 Acer truncatum HOM05D007592 ORTHO05D004645 9.5e-09 63.9 108 39.8
BcaNung00662 Brassica carinata HOM05D007592 ORTHO05D004645 1.2e-08 63.5 117 34.2
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 2.1e-08 62.8 114 36.0
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 2.1e-08 62.8 118 37.3
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 3.6e-08 62.0 117 33.3
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 3.6e-08 62.0 117 34.2
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 6.2e-08 61.2 119 34.5
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 8.1e-08 60.8 117 33.3
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 8.1e-08 60.8 118 35.6
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-07 60.5 129 33.3
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-07 60.5 129 33.3
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-07 60.5 129 33.3
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-07 60.5 129 33.3
FAN18G2940 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-07 60.5 129 33.3
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-07 60.5 129 33.3
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-07 60.5 129 33.3
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-07 59.7 127 36.2
FAN09G4280 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.3e-07 59.3 129 33.3
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.3e-07 59.3 47 59.6
FvH4_4g12912 Fragaria vesca HOM05D007743 ORTHO05D004645 3.1e-07 58.9 101 39.6
Atru.chr6.1370 Acer truncatum HOM05D007592 ORTHO05D004645 5.2e-07 58.2 108 38.0
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.2e-07 58.2 129 32.6
FAN24G2509 Fragaria x ananassa HOM05D007743 ORTHO05D004645 8.9e-07 57.4 127 33.9
PGSC0003DMG400046067 Solanum tuberosum HOM05D007592 ORTHO05D004645 8.9e-07 57.4 48 58.3
Atru.chr8.363 Acer truncatum HOM05D007592 ORTHO05D004645 1.2e-06 57.0 112 34.8
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 1.2e-06 57.0 127 32.3
Atru.chr4.386 Acer truncatum HOM05D007592 ORTHO05D004645 3.4e-06 55.5 110 36.4
Atru.ctg24.16 Acer truncatum HOM05D007592 ORTHO05D004645 3.4e-06 55.5 98 35.7
FAN18G0507 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.4e-06 55.5 111 32.4


User provided reference genes

Program Settings