Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 3.7e-165 584.7 279 100.0
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 2.6e-118 429.1 275 68.7
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 3.4e-118 428.7 273 71.4
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 7.6e-118 427.6 273 71.4
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.3e-117 426.8 275 70.9
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 6.4e-117 424.5 273 70.0
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 1.2e-115 420.2 278 68.7
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 6.6e-114 414.5 278 68.3
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 1.2e-110 403.7 273 68.1
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 5.8e-110 401.4 276 67.8
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.2e-109 399.4 276 67.0
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.2e-109 399.4 276 66.7
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 3.8e-109 398.7 278 66.2
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 3.2e-108 395.6 273 67.4
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 3.2e-108 395.6 276 67.0
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 5.4e-108 394.8 278 65.1
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 5.4e-108 394.8 276 65.6
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.2e-107 393.7 276 65.2
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 1.6e-107 393.3 277 66.1
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 2.3e-106 389.4 273 65.9
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 3.9e-106 388.7 273 65.6
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 6.7e-106 387.9 279 63.4
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 1.1e-105 387.1 272 65.1
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 5.6e-105 384.8 275 64.4
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 1.3e-104 383.6 273 65.2
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.1e-104 382.9 276 65.6
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 3.6e-104 382.1 277 65.7
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 3.6e-104 382.1 275 63.3
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-103 380.6 278 65.5
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-103 380.6 278 65.5
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-103 380.6 278 65.5
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 3.1e-103 379.0 295 62.0
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 4.0e-103 378.6 273 63.7
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 1.2e-102 377.1 264 65.5
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.5e-102 376.7 267 64.8
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 2.0e-102 376.3 273 64.5
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 2.0e-102 376.3 224 72.8
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 2.6e-102 375.9 276 60.9
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 4.5e-102 375.2 267 64.4
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 5.8e-102 374.8 271 64.6
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 1.7e-101 373.2 267 64.4
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 2.2e-101 372.9 271 64.2
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 3.2e-100 369.0 270 62.6
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 5.5e-100 368.2 275 61.8
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 9.3e-100 367.5 279 61.6
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.2e-99 367.1 270 62.2
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 1.6e-99 366.7 273 63.0
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 5.1e-98 361.7 275 60.7
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 1.1e-97 360.5 272 61.0
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.1e-97 360.5 271 61.3
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.8e-96 355.9 234 70.1
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 4.8e-96 355.1 273 59.7
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.2e-94 350.5 276 59.4
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 1.5e-94 350.1 285 57.2
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 3.4e-94 349.0 279 58.8
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 4.9e-93 345.1 284 59.2
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 4.9e-93 345.1 308 54.2
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 1.9e-92 343.2 281 57.3
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.8e-90 336.7 273 58.2
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 3.9e-90 335.5 278 57.6
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 3.3e-89 332.4 271 56.1
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 2.8e-88 329.3 271 58.3
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 4.8e-88 328.6 274 56.9
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.8e-87 326.6 221 67.0
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 2.4e-87 326.2 226 66.8
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 3.1e-87 325.9 319 50.5
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 9.0e-87 324.3 231 64.1
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 6.1e-83 311.6 286 53.1
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 1.3e-82 310.5 273 53.5
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.9e-82 308.9 273 54.9
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 3.9e-82 308.9 265 53.6
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 1.5e-81 307.0 269 52.8
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 6.9e-79 298.1 265 52.1
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 7.9e-75 284.6 231 56.7
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.6e-73 279.6 176 74.4
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 2.2e-72 276.6 183 67.2
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 1.3e-69 267.3 271 46.9
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.5e-68 263.1 188 64.4
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 1.1e-65 254.2 165 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 2.0e-65 253.4 278 44.6
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 5.7e-65 251.9 328 41.5
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 9.7e-65 251.1 179 66.5
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 2.6e-62 243.0 278 45.7
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 1.0e-61 241.1 267 44.6
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 2.7e-59 233.0 172 64.0
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.1e-55 221.1 181 55.2
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 7.2e-52 208.4 236 46.6
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 6.1e-51 205.3 279 36.9
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 6.8e-50 201.8 247 46.2
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.5e-46 189.1 136 61.0
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.5e-44 183.3 135 60.0
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 1.8e-39 167.2 149 55.0
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.1e-39 166.4 113 67.3
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 3.1e-39 166.4 309 34.6
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 2.3e-37 160.2 130 60.0
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 1.7e-32 144.1 85 78.8
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 3.1e-26 123.2 82 72.0
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.9e-23 114.0 122 41.8
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.3e-21 107.8 283 28.3
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 6.6e-13 79.0 75 54.7
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 1.4e-10 71.2 74 50.0
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.8e-10 70.9 234 25.2
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 5.2e-10 69.3 38 76.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 8.9e-10 68.6 221 28.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.4e-09 66.6 198 25.8
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 7.6e-09 65.5 232 25.4
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.9e-09 65.1 180 27.2
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.3e-08 64.7 39 71.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.3e-08 64.7 214 26.6
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.3e-08 64.7 54 53.7
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.2e-08 63.9 167 27.5
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.2e-08 63.9 212 26.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.9e-08 62.8 167 28.7
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 4.9e-08 62.8 204 27.9
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 6.4e-08 62.4 167 28.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 8.4e-08 62.0 156 29.5
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 8.4e-08 62.0 220 25.5
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.1e-07 61.6 167 28.1
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.1e-07 61.6 238 26.5
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.9e-07 60.8 256 24.6
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.9e-07 60.8 216 24.5
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.9e-07 60.8 205 24.4
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 3.2e-07 60.1 220 24.5
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.2e-07 60.1 202 26.7
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.2e-07 60.1 246 24.0
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 4.1e-07 59.7 204 26.0
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.1e-07 59.7 147 27.9
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.4e-07 59.3 142 31.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 5.4e-07 59.3 203 27.1
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.2e-06 58.2 152 28.3
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.6e-06 57.8 212 25.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.6e-06 57.8 159 27.7
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.6e-06 57.8 158 25.3
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.6e-06 57.8 153 28.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.1e-06 57.4 204 24.5
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 2.1e-06 57.4 219 26.9
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.1e-06 57.4 170 24.7
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.7e-06 57.0 167 26.9
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.5e-06 56.6 221 26.2
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.5e-06 56.6 143 30.8
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 4.6e-06 56.2 220 24.1
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 4.6e-06 56.2 220 24.1
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 4.6e-06 56.2 234 24.4
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 4.6e-06 56.2 199 25.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 4.6e-06 56.2 152 27.6
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 4.6e-06 56.2 180 25.6
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 4.6e-06 56.2 180 25.6
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 6.0e-06 55.8 200 25.0
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.0e-06 55.8 152 27.0
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 6.0e-06 55.8 145 29.0
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 6.0e-06 55.8 153 28.1
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 6.0e-06 55.8 208 28.4
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 7.8e-06 55.5 212 25.0
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 7.8e-06 55.5 200 25.0
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 7.8e-06 55.5 200 25.0
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 7.8e-06 55.5 159 27.0
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 7.8e-06 55.5 151 27.8


User provided reference genes

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