Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 0.0e+00 1344.3 672 100.0
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 7.4e-260 900.6 674 70.2
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 5.3e-258 894.4 674 69.0
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.9e-252 875.9 677 68.5
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 1.4e-250 869.8 697 66.4
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 2.9e-240 835.5 687 64.2
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 4.3e-236 821.6 665 63.2
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 2.8e-235 818.9 686 61.8
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 1.4e-234 816.6 683 62.5
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 2.2e-232 809.3 683 62.8
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 5.5e-231 804.7 666 61.9
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 9.4e-231 803.9 674 61.6
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 2.0e-228 796.2 676 62.6
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.7e-228 794.7 687 60.4
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 3.7e-227 792.0 678 60.3
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 3.8e-224 781.9 678 60.8
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 5.0e-224 781.6 678 60.9
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.1e-223 780.4 678 61.1
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 5.7e-220 768.1 682 59.5
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 9.7e-220 767.3 683 57.5
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 8.2e-219 764.2 680 58.5
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 1.8e-218 763.1 683 58.0
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.8e-218 763.1 606 65.2
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 5.9e-217 758.1 675 58.1
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 1.7e-216 756.5 657 60.3
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 2.9e-216 755.7 682 56.9
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 8.5e-216 754.2 682 57.6
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 4.2e-215 751.9 680 57.8
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.1e-214 749.6 683 58.9
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.4e-213 746.9 676 58.0
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.5e-209 732.3 625 61.3
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 5.0e-208 728.4 676 58.1
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.5e-207 726.9 751 52.9
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 2.1e-206 723.0 679 56.4
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 5.2e-205 718.4 689 55.3
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 3.4e-204 715.7 681 55.9
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.7e-203 713.4 668 57.0
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.8e-203 712.6 738 53.7
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.4e-202 709.5 668 57.0
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 4.1e-202 708.8 686 55.2
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 6.1e-198 694.9 625 58.7
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.2e-196 690.6 716 53.1
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 3.4e-196 689.1 645 56.6
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 4.4e-196 688.7 525 66.9
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 4.9e-195 685.3 679 55.8
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.6e-193 680.2 689 53.4
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 1.6e-193 680.2 691 53.0
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 3.5e-193 679.1 669 54.0
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 2.3e-192 676.4 676 55.6
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 2.3e-192 676.4 674 53.0
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 4.3e-191 672.2 684 52.9
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 4.7e-190 668.7 668 53.4
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.2e-188 664.1 664 54.4
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 5.7e-188 661.8 676 53.7
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 4.1e-186 655.6 682 53.8
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 4.1e-186 655.6 704 51.6
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 2.3e-184 649.8 681 49.9
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 8.6e-184 647.9 681 50.2
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.9e-183 646.7 676 53.4
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 1.4e-181 640.6 682 51.3
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 6.8e-181 638.3 683 51.1
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 8.9e-181 637.9 671 52.2
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 5.8e-180 635.2 690 52.5
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.9e-178 630.2 664 51.8
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 5.4e-178 628.6 679 51.8
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 2.7e-177 626.3 631 53.6
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 6.0e-177 625.2 664 51.7
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 1.0e-176 624.4 664 51.4
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.3e-176 623.2 671 51.3
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 3.0e-176 622.9 677 51.7
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 8.6e-176 621.3 687 51.4
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 8.6e-176 621.3 681 48.6
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 4.3e-175 619.0 683 50.7
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 7.3e-175 618.2 670 51.6
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 6.2e-174 615.1 683 50.1
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 6.2e-174 615.1 683 50.1
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 1.1e-173 614.4 671 51.1
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 6.8e-173 611.7 691 49.5
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.2e-172 610.9 675 50.8
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 2.9e-171 606.3 633 52.1
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 6.4e-171 605.1 671 50.1
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 6.4e-171 605.1 684 49.4
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.4e-170 603.2 675 51.0
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 4.6e-169 599.0 674 50.0
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 8.6e-168 594.7 668 49.3
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.4e-162 576.6 666 46.4
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.6e-161 573.9 614 51.3
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 5.1e-160 568.9 699 46.2
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.0e-156 557.0 602 51.8
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 3.4e-156 556.2 738 44.7
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 6.4e-155 552.0 651 48.2
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.4e-146 524.2 679 44.6
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.8e-141 507.3 523 52.4
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 4.5e-140 502.7 640 44.8
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 5.8e-140 502.3 673 43.7
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 5.8e-140 502.3 721 42.9
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 1.5e-135 487.6 511 53.8
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 1.6e-134 484.2 483 56.1
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 5.8e-132 475.7 522 53.6
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 4.9e-131 472.6 521 53.0
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 4.8e-126 456.1 745 37.4
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.9e-119 434.1 740 35.8
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.3e-118 431.4 625 40.0
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.2e-116 424.9 682 36.2
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.3e-115 421.4 422 55.5
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 2.1e-113 414.1 697 37.7
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 5.1e-112 409.5 490 49.4
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.4e-109 401.4 444 51.8
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.5e-108 397.9 372 53.0
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 2.1e-105 387.5 676 34.9
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 4.4e-103 379.8 627 38.9
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.3e-102 378.3 249 70.7
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.2e-99 367.5 736 34.6
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 4.2e-98 363.2 231 73.2
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 6.5e-83 312.8 340 50.6
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 3.8e-75 287.0 185 68.6
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 8.0e-73 279.3 338 50.0
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.8e-69 268.1 413 41.2
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 4.7e-65 253.4 343 41.7
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.4e-54 216.5 116 80.2
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.9e-50 204.9 311 39.5
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.9e-29 135.2 103 64.1
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 6.7e-27 126.7 155 48.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.3e-19 102.4 151 43.7
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 8.7e-19 99.8 158 38.0
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.5e-18 99.0 249 33.7
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.9e-18 98.6 135 43.7
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 9.6e-18 96.3 132 43.9
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.4e-16 91.7 86 58.1
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 4.9e-14 84.0 77 53.2
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.5e-10 72.4 67 55.2
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 1.5e-07 62.4 101 38.6
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 2.6e-07 61.6 67 50.7


User provided reference genes

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