Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G083338 Manihot esculenta HOM05D003424 ORTHO05D004025 8.3e-61 236.9 122 100.0
Manes.09G010300 Manihot esculenta HOM05D003424 ORTHO05D004025 6.2e-48 194.1 110 92.7
Manes.09G010401 Manihot esculenta HOM05D003424 ORTHO05D004025 6.2e-48 194.1 110 92.7
Manes.03G083194 Manihot esculenta HOM05D003424 ORTHO05D004025 8.0e-48 193.7 110 92.7
Manes.03G083290 Manihot esculenta HOM05D003424 ORTHO05D004025 8.0e-48 193.7 110 92.7
Manes.03G083322 Manihot esculenta HOM05D003424 ORTHO05D004025 8.0e-48 193.7 110 92.7
PGR004G2306 Punica granatum HOM05D003424 ORTHO05D004025 6.4e-45 184.1 110 86.4
MELO3C026327.2 Cucumis melo HOM05D003424 ORTHO05D004025 2.4e-44 182.2 110 85.5
CsaV3_4G027730 Cucumis sativus L. HOM05D003424 ORTHO05D004025 2.4e-44 182.2 110 85.5
Gohir.A11G309600 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.4e-44 182.2 110 84.5
Potri.006G047600 Populus trichocarpa HOM05D003424 ORTHO05D004025 3.2e-44 181.8 110 85.5
Duzib093G1716 Durio zibethinus HOM05D003424 ORTHO05D004025 7.1e-44 180.6 110 84.5
COL.COLO4_36514 Corchorus olitorius HOM05D003424 ORTHO05D004025 9.2e-44 180.3 110 84.5
Dinv39664 Davidia involucrata HOM05D003424 ORTHO05D004025 9.2e-44 180.3 110 82.7
Atru.chr1.1209 Acer truncatum HOM05D003424 ORTHO05D004025 1.2e-43 179.9 109 84.4
CiPaw.09G040700 Carya illinoinensis HOM05D003424 ORTHO05D004025 2.1e-43 179.1 110 83.6
Gohir.D11G324900 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.1e-43 179.1 110 83.6
Sabra06G0033100 Salix brachista HOM05D003424 ORTHO05D004025 2.1e-43 179.1 110 84.5
Prupe.7G052700 Prunus persica HOM05D003424 ORTHO05D004025 3.5e-43 178.3 110 83.6
arahy.Tifrunner.gnm1.ann1.MH7EBB Arachis hypogaea HOM05D003424 ORTHO05D004025 4.6e-43 177.9 110 83.6
CiPaw.10G035800 Carya illinoinensis HOM05D003424 ORTHO05D004025 4.6e-43 177.9 110 83.6
Gohir.D11G325000 Gossypium hirsutum HOM05D003424 ORTHO05D004025 4.6e-43 177.9 110 82.7
Gorai.007G355700 Gossypium raimondii HOM05D003424 ORTHO05D004025 4.6e-43 177.9 110 82.7
Gorai.007G355800 Gossypium raimondii HOM05D003424 ORTHO05D004025 4.6e-43 177.9 110 82.7
Sc19g0008510 Simmondsia chinensis HOM05D003424 ORTHO05D004025 4.6e-43 177.9 110 81.8
TWI77G0522 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 4.6e-43 177.9 110 81.8
Phvul.007G250100 Phaseolus vulgaris HOM05D003424 ORTHO05D004025 1.0e-42 176.8 110 81.8
TWI53G0167 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 1.0e-42 176.8 110 81.8
arahy.Tifrunner.gnm1.ann1.ZS3MQE Arachis hypogaea HOM05D003424 ORTHO05D004025 1.3e-42 176.4 109 84.4
THA.LOC104801979 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 1.3e-42 176.4 110 81.8
RcHm_v2.0_Chr3g0483891 Rosa chinensis HOM05D003424 ORTHO05D004025 1.7e-42 176.0 110 82.7
Thecc.05G303700 Theobroma cacao HOM05D003424 ORTHO05D004025 1.7e-42 176.0 110 82.7
Sed0005407 Sechium edule HOM05D003424 ORTHO05D004025 2.3e-42 175.6 110 81.8
Hma1.2p1_0110F.1_g052940 Hydrangea macrophylla HOM05D003424 ORTHO05D004025 3.0e-42 175.3 110 80.9
Lj5g0010982 Lotus japonicus HOM05D003424 ORTHO05D004025 3.0e-42 175.3 110 81.8
MD12G1083100 Malus domestica HOM05D003424 ORTHO05D004025 3.0e-42 175.3 110 81.8
BcaB02g08321 Brassica carinata HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 81.8
A04p03210 Brassica napus HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 81.8
C04p35090 Brassica napus HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 81.8
BolC4t25065H Brassica oleracea HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 81.8
BraA04t16043Z Brassica rapa HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 81.8
HanXRQChr08g0229101 Helianthus annuus HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 80.9
Sp5g05310 Schrenkiella parvula HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 81.8
THA.LOC104824428 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 3.9e-42 174.9 110 80.9
MD14G1078200 Malus domestica HOM05D003424 ORTHO05D004025 6.6e-42 174.1 110 80.9
Hund12364 Selenicereus undatus HOM05D003424 ORTHO05D004025 6.6e-42 174.1 110 79.1
Hund15356 Selenicereus undatus HOM05D003424 ORTHO05D004025 6.6e-42 174.1 110 79.1
Actinidia17671 Actinidia chinensis HOM05D003424 ORTHO05D004025 8.6e-42 173.7 110 81.8
Glyma.10G106100 Glycine max HOM05D003424 ORTHO05D004025 8.6e-42 173.7 110 80.9
HanXRQChr09g0258441 Helianthus annuus HOM05D003424 ORTHO05D004025 8.6e-42 173.7 110 80.0
Glyma.02G187100 Glycine max HOM05D003424 ORTHO05D004025 1.1e-41 173.3 110 80.9
Lsat_1_v5_gn_8_117161 Lactuca sativa HOM05D003424 ORTHO05D004025 1.1e-41 173.3 110 80.0
Potri.016G043800 Populus trichocarpa HOM05D003424 ORTHO05D004025 1.1e-41 173.3 110 81.8
VMungo0720G2843 Vigna mungo HOM05D003424 ORTHO05D004025 1.1e-41 173.3 110 80.9
Aa31LG10G12160 Aethionema arabicum HOM05D003424 ORTHO05D004025 1.5e-41 172.9 110 80.0
BcaC07g40060 Brassica carinata HOM05D003424 ORTHO05D004025 1.5e-41 172.9 110 80.9
ClCG04G003770 Citrullus lanatus HOM05D003424 ORTHO05D004025 1.5e-41 172.9 120 77.5
Eucgr.A02306 Eucalyptus grandis HOM05D003424 ORTHO05D004025 1.5e-41 172.9 110 81.8
Lalb_Chr08g0235171 Lupinus albus HOM05D003424 ORTHO05D004025 1.5e-41 172.9 110 79.1
Lalb_Chr08g0235181 Lupinus albus HOM05D003424 ORTHO05D004025 1.5e-41 172.9 110 79.1
Duzib128G0558 Durio zibethinus HOM05D003424 ORTHO05D004025 1.9e-41 172.6 110 79.1
FvH4_6g24580 Fragaria vesca HOM05D003424 ORTHO05D004025 1.9e-41 172.6 110 80.0
A09p50210 Brassica napus HOM05D003424 ORTHO05D004025 3.3e-41 171.8 110 80.9
BraA09t40471Z Brassica rapa HOM05D003424 ORTHO05D004025 3.3e-41 171.8 110 80.9
QL07p003998 Quercus lobata HOM05D003424 ORTHO05D004025 3.3e-41 171.8 110 80.9
AL5G38830 Arabidopsis lyrata HOM05D003424 ORTHO05D004025 4.3e-41 171.4 110 80.0
Carub.0005s2414 Capsella rubella HOM05D003424 ORTHO05D004025 4.3e-41 171.4 110 80.9
BolC8t50881H Brassica oleracea HOM05D003424 ORTHO05D004025 5.6e-41 171.0 110 80.9
Ciclev10004983m.g Citrus clementina HOM05D003424 ORTHO05D004025 5.6e-41 171.0 111 79.3
Lalb_Chr23g0274141 Lupinus albus HOM05D003424 ORTHO05D004025 5.6e-41 171.0 110 79.1
Sabra16G0048600 Salix brachista HOM05D003424 ORTHO05D004025 5.6e-41 171.0 114 79.8
DCAR_020512 Daucus carota HOM05D003424 ORTHO05D004025 7.3e-41 170.6 110 81.8
Aa31LG1G23570 Aethionema arabicum HOM05D003424 ORTHO05D004025 9.5e-41 170.2 110 79.1
AT3G57290 Arabidopsis thaliana HOM05D003424 ORTHO05D004025 9.5e-41 170.2 110 78.2
Cfa000245 Carpinus fangiana HOM05D003424 ORTHO05D004025 9.5e-41 170.2 109 80.7
Lj1C1124G13 Lonicera japonica HOM05D003424 ORTHO05D004025 9.5e-41 170.2 110 79.1
BcaC07g40058 Brassica carinata HOM05D003424 ORTHO05D004025 1.2e-40 169.9 110 80.0
C08p32690 Brassica napus HOM05D003424 ORTHO05D004025 1.2e-40 169.9 110 80.0
Cfa016772 Carpinus fangiana HOM05D003424 ORTHO05D004025 1.2e-40 169.9 109 79.8
CDE09G1093 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 1.2e-40 169.9 108 79.6
ECA232G2680 Erigeron canadensis HOM05D003424 ORTHO05D004025 1.2e-40 169.9 110 78.2
Psat6g117080 Pisum sativum HOM05D003424 ORTHO05D004025 1.2e-40 169.9 110 79.1
TAR623G1380 Trochodendron aralioides HOM05D003424 ORTHO05D004025 1.2e-40 169.9 110 76.4
FAN14G2785 Fragaria x ananassa HOM05D003424 ORTHO05D004025 1.6e-40 169.5 110 79.1
vmacro09050 Vaccinium macrocarpon HOM05D003424 ORTHO05D004025 1.6e-40 169.5 109 79.8
MSTRG.6406 Avicennia marina HOM05D003424 ORTHO05D004025 2.1e-40 169.1 110 79.1
CARHR167490 Cardamine hirsuta HOM05D003424 ORTHO05D004025 2.1e-40 169.1 110 79.1
Haze_19783 Corylus avellana HOM05D003424 ORTHO05D004025 2.8e-40 168.7 109 78.9
Thhalv10005924m.g Eutrema salsugineum HOM05D003424 ORTHO05D004025 2.8e-40 168.7 110 79.1
Nn2g15108 Nelumbo nucifera HOM05D003424 ORTHO05D004025 2.8e-40 168.7 107 77.6
Haze_21124 Corylus avellana HOM05D003424 ORTHO05D004025 3.6e-40 168.3 109 79.8
Medtr2g079780 Medicago truncatula HOM05D003424 ORTHO05D004025 3.6e-40 168.3 110 78.2
FAN02G1912 Fragaria x ananassa HOM05D003424 ORTHO05D004025 4.7e-40 167.9 109 79.8
Psat5g246160 Pisum sativum HOM05D003424 ORTHO05D004025 4.7e-40 167.9 110 77.3
Cfa017072 Carpinus fangiana HOM05D003424 ORTHO05D004025 8.1e-40 167.2 109 78.9
Sp4g23800 Schrenkiella parvula HOM05D003424 ORTHO05D004025 8.1e-40 167.2 110 77.3
CAN.G1656.4 Capsicum annuum HOM05D003424 ORTHO05D004025 1.8e-39 166.0 109 78.0
AUR62026108 Chenopodium quinoa HOM05D003424 ORTHO05D004025 1.8e-39 166.0 110 74.5
Pp3c8_15010 Physcomitrium patens HOM05D003424 ORTHO05D004025 1.8e-39 166.0 109 76.1
CANSAT80G0981 Cannabis sativa HOM05D003424 ORTHO05D004025 2.3e-39 165.6 110 76.4
CANSAT80G2233 Cannabis sativa HOM05D003424 ORTHO05D004025 2.3e-39 165.6 110 76.4
Peaxi162Scf00069g01214 Petunia axillaris HOM05D003424 ORTHO05D004025 2.3e-39 165.6 108 79.6
Ca_12264_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 3.1e-39 165.2 110 77.3
Ca_30550_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 3.1e-39 165.2 110 77.3
Ah.04g164170 Amaranthus hybridus HOM05D003424 ORTHO05D004025 4.0e-39 164.9 109 78.0
EL10Ac3g07146 Beta vulgaris HOM05D003424 ORTHO05D004025 4.0e-39 164.9 109 78.0
AUR62024517 Chenopodium quinoa HOM05D003424 ORTHO05D004025 4.0e-39 164.9 110 73.6
Medtr1g051820 Medicago truncatula HOM05D003424 ORTHO05D004025 5.2e-39 164.5 110 78.2
SEGI_12156 Sequoiadendron giganteum HOM05D003424 ORTHO05D004025 5.2e-39 164.5 109 77.1
Mapoly0007s0188 Marchantia polymorpha HOM05D003424 ORTHO05D004025 6.8e-39 164.1 109 74.3
Nitab4.5_0000364g0010 Nicotiana tabacum HOM05D003424 ORTHO05D004025 6.8e-39 164.1 109 77.1
Pp3c24_6740 Physcomitrium patens HOM05D003424 ORTHO05D004025 8.9e-39 163.7 109 75.2
SalBow6G0750 Salvia bowleyana HOM05D003424 ORTHO05D004025 8.9e-39 163.7 109 78.0
Migut.J01716 Erythranthe guttata HOM05D003424 ORTHO05D004025 1.2e-38 163.3 109 76.1
Nitab4.5_0000677g0120 Nicotiana tabacum HOM05D003424 ORTHO05D004025 2.0e-38 162.5 109 76.1
CDE08G1224 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 5.8e-38 161.0 106 77.4
Migut.K00104 Erythranthe guttata HOM05D003424 ORTHO05D004025 5.8e-38 161.0 109 75.2
Manes.03G083210 Manihot esculenta HOM05D003424 ORTHO05D004025 9.9e-38 160.2 84 95.2
Solyc10g079880.2 Solanum lycopersicum HOM05D003424 ORTHO05D004025 1.3e-37 159.8 106 75.5
Sopen10g030490 Solanum pennellii HOM05D003424 ORTHO05D004025 1.3e-37 159.8 106 75.5
PGSC0003DMG400029829 Solanum tuberosum HOM05D003424 ORTHO05D004025 1.3e-37 159.8 106 75.5
ATR0329G046 Amborella trichopoda HOM05D003424 ORTHO05D004025 1.7e-37 159.5 110 72.7
HPP92_006701 Vanilla planifolia HOM05D003424 ORTHO05D004025 4.9e-37 157.9 110 72.7
FAN05G4136 Fragaria x ananassa HOM05D003424 ORTHO05D004025 6.4e-37 157.5 133 65.4
Aqoxy2G00237 Aquilegia oxysepala HOM05D003424 ORTHO05D004025 8.3e-37 157.1 110 71.8
Pp3c20_5690 Physcomitrium patens HOM05D003424 ORTHO05D004025 2.4e-36 155.6 109 70.6
Rhsim04G0106600 Rhododendron simsii HOM05D003424 ORTHO05D004025 3.2e-36 155.2 138 62.3
Zm00001eb095240 Zea mays HOM05D003424 ORTHO05D004025 1.6e-35 152.9 109 71.6
SGA_v2.0_scaffold105G30370 Striga asiatica HOM05D003424 ORTHO05D004025 3.5e-35 151.8 127 66.9
TAR633G0793 Trochodendron aralioides HOM05D003424 ORTHO05D004025 3.0e-34 148.7 110 68.2
CBR_g48694 Chara braunii HOM05D003424 ORTHO05D004025 3.9e-34 148.3 109 67.0
Zm00001eb303380 Zea mays HOM05D003424 ORTHO05D004025 5.1e-34 147.9 109 68.8
Os07g0222300 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 4.7e-32 141.4 106 67.0
Nn7g36420 Nelumbo nucifera HOM05D003424 ORTHO05D004025 2.0e-30 136.0 107 68.2
A06p18120 Brassica napus HOM05D003424 ORTHO05D004025 2.9e-29 132.1 111 65.8
A10p04150 Brassica napus HOM05D003424 ORTHO05D004025 2.9e-29 132.1 111 65.8
BraA04t18461Z Brassica rapa HOM05D003424 ORTHO05D004025 2.9e-29 132.1 111 65.8
SMO223G0020 Selaginella moellendorffii HOM05D003424 ORTHO05D004025 4.9e-29 131.3 109 62.4
PSO675G7866 Papaver somniferum HOM05D003424 ORTHO05D004025 6.4e-29 131.0 105 64.8
A08p12660 Brassica napus HOM05D003424 ORTHO05D004025 1.1e-28 130.2 111 65.8
PSO675G6801 Papaver somniferum HOM05D003424 ORTHO05D004025 3.2e-28 128.6 105 62.9
Gohir.A11G309500 Gossypium hirsutum HOM05D003424 ORTHO05D004025 5.4e-28 127.9 73 86.3
GSVIVG01005045001 Vitis vinifera HOM05D003424 ORTHO05D004025 1.7e-26 122.9 68 89.7
Cpa.g.sc182.25 Carica papaya HOM05D003424 ORTHO05D004025 2.3e-26 122.5 68 89.7
Zm00001eb131780 Zea mays HOM05D003424 ORTHO05D004025 5.1e-26 121.3 85 74.1
Oeu042058.1 Olea europaea HOM05D002157 ORTHO05D002197 4.0e-23 111.7 132 50.8
Cc00_g29150 Coffea canephora HOM05D003424 ORTHO05D004025 9.9e-22 107.1 68 75.0
Cc06_g18160 Coffea canephora HOM05D003424 ORTHO05D004025 9.9e-22 107.1 68 75.0
Cc06_g18170 Coffea canephora HOM05D003424 ORTHO05D004025 9.9e-22 107.1 68 75.0
Cre12.g498100 Chlamydomonas reinhardtii HOM05D003424 ORTHO05D004025 2.2e-21 105.9 109 48.6
Gorai.007G170700 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.2e-21 105.9 63 82.5
Os07g0167000 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 9.3e-20 100.5 76 69.7
BolC5t33031H Brassica oleracea HOM05D003424 ORTHO05D005993 1.2e-19 100.1 116 53.4
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 4.6e-19 98.2 113 53.1
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 7.9e-19 97.4 108 55.6
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 1.0e-18 97.1 110 54.5
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 1.0e-18 97.1 110 54.5
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 1.0e-18 97.1 110 54.5
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 1.3e-18 96.7 110 54.5
Sed0024607 Sechium edule HOM05D003424 ORTHO05D004025 4.3e-17 91.7 79 65.8
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 7.3e-17 90.9 107 52.3
Haze_26473 Corylus avellana HOM05D003424 ORTHO05D004025 1.6e-16 89.7 96 44.8
PRCOL_00006598 Prasinoderma coloniale HOM05D003424 ORTHO05D004025 2.8e-16 89.0 104 43.3
MCO16G302 Micromonas commoda HOM05D003424 ORTHO05D004025 3.6e-16 88.6 105 45.7
Os07g0503700 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 3.6e-16 88.6 119 47.9
Gohir.A09G048100 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.4e-15 86.7 52 82.7
Gohir.A11G217200 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.4e-15 86.7 52 82.7
Gohir.D07G001450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.4e-15 86.7 52 82.7
Gohir.D07G228450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.4e-15 86.7 52 82.7
Gohir.D11G130650 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.4e-15 86.7 52 82.7
BcaB02g07613 Brassica carinata HOM05D003424 ORTHO05D004025 2.4e-15 85.9 58 77.6
Gohir.D07G177400 Gossypium hirsutum HOM05D003424 ORTHO05D004025 3.1e-15 85.5 52 82.7
TPR.G29633 Trifolium pratense HOM05D003424 ORTHO05D004025 4.0e-15 85.1 55 78.2
BolC2t10025H Brassica oleracea HOM05D003424 ORTHO05D005993 5.3e-15 84.7 102 52.9
Gohir.D06G106300 Gossypium hirsutum HOM05D003424 ORTHO05D004025 6.9e-15 84.3 52 80.8
Gohir.A09G249400 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.2e-14 83.6 52 80.8
HanXRQChr01g0012641 Helianthus annuus HOM05D003424 ORTHO05D004025 1.2e-14 83.6 60 70.0
Gorai.010G177900 Gossypium raimondii HOM05D003424 ORTHO05D004025 1.5e-14 83.2 52 76.9
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 9.3e-12 73.9 86 53.5
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 1.8e-10 69.7 128 39.1
HanXRQChr12g0369171 Helianthus annuus HOM05D003424 ORTHO05D004025 3.0e-10 68.9 88 47.7
BcaC03g16218 Brassica carinata HOM05D000306 ORTHO05D005993 2.1e-08 62.8 61 59.0
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.7e-08 62.0 66 56.1
Cfa022230 Carpinus fangiana HOM05D003424 ORTHO05D004025 4.8e-08 61.6 110 35.5
Psat4g047240 Pisum sativum HOM05D003424 ORTHO05D004025 1.1e-07 60.5 52 57.7
A01p31850 Brassica napus HOM05D001713 ORTHO05D001669 5.3e-07 58.2 58 56.9
Psat5g243240 Pisum sativum HOM05D003424 ORTHO05D004025 2.6e-06 55.8 68 55.9


User provided reference genes

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