Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G083306 Manihot esculenta HOM05D000009 ORTHO05D016233 1.6e-35 152.1 73 100.0
Manes.09G010450 Manihot esculenta HOM05D000009 ORTHO05D000008 6.5e-29 130.2 66 92.4
Manes.03G083242 Manihot esculenta HOM05D000009 ORTHO05D000008 5.0e-21 104.0 50 94.0
Manes.09G025800 Manihot esculenta HOM05D000009 ORTHO05D000008 1.2e-19 99.4 68 66.2
Manes.09G025302 Manihot esculenta HOM05D000009 ORTHO05D000008 2.0e-14 82.0 74 58.1
Manes.09G023900 Manihot esculenta HOM05D000009 ORTHO05D000008 1.7e-13 79.0 63 60.3
Manes.09G022566 Manihot esculenta HOM05D000009 ORTHO05D000008 2.3e-13 78.6 63 60.3
TWI38G1987 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 2.9e-13 78.2 61 59.0
QL07p004156 Quercus lobata HOM05D000009 ORTHO05D000008 3.9e-13 77.8 61 57.4
Manes.09G022810 Manihot esculenta HOM05D000009 ORTHO05D000008 5.0e-13 77.4 63 60.3
Manes.09G022900 Manihot esculenta HOM05D000009 ORTHO05D000008 5.0e-13 77.4 63 60.3
Manes.09G022780 Manihot esculenta HOM05D000009 ORTHO05D000008 6.6e-13 77.0 60 61.7
Manes.09G022840 Manihot esculenta HOM05D000009 ORTHO05D000008 6.6e-13 77.0 60 61.7
TWI38G0270 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 6.6e-13 77.0 61 55.7
QL07p001350 Quercus lobata HOM05D000009 ORTHO05D000008 8.6e-13 76.6 61 60.7
Manes.09G025130 Manihot esculenta HOM05D000009 ORTHO05D000008 1.5e-12 75.9 65 56.9
TWI38G1110 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 1.5e-12 75.9 61 59.0
TWI38G1842 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 1.9e-12 75.5 61 55.7
TWI38G0369 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 2.5e-12 75.1 61 54.1
TWI38G2376 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 4.3e-12 74.3 63 54.0
QL02p047554 Quercus lobata HOM05D000009 ORTHO05D000008 5.6e-12 73.9 61 55.7
Sed0014648 Sechium edule HOM05D000009 ORTHO05D025101 5.6e-12 73.9 61 59.0
Manes.09G022700 Manihot esculenta HOM05D000009 ORTHO05D000008 1.6e-11 72.4 63 58.7
Manes.09G023200 Manihot esculenta HOM05D000009 ORTHO05D000008 1.6e-11 72.4 63 57.1
Manes.09G023800 Manihot esculenta HOM05D000009 ORTHO05D000008 1.6e-11 72.4 63 57.1
Manes.09G024032 Manihot esculenta HOM05D000009 ORTHO05D000008 1.6e-11 72.4 63 57.1
TWI38G0183 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 1.6e-11 72.4 61 52.5
Duzib128G1732 Durio zibethinus HOM05D000009 ORTHO05D000008 2.8e-11 71.6 63 60.3
TWI38G1544 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 2.8e-11 71.6 61 52.5
TWI38G1934 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 2.8e-11 71.6 61 52.5
Manes.12G091600 Manihot esculenta HOM05D000009 ORTHO05D000008 6.1e-11 70.5 63 57.1
TWI38G0948 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 1.0e-10 69.7 61 54.1
Manes.09G019801 Manihot esculenta HOM05D000009 ORTHO05D000008 2.3e-10 68.6 68 51.5
TWI81G0469 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 2.3e-10 68.6 61 54.1
Dinv06997 Davidia involucrata HOM05D000009 ORTHO05D000008 3.1e-10 68.2 62 51.6
Duzib128G1049 Durio zibethinus HOM05D000009 ORTHO05D000008 4.0e-10 67.8 63 47.6
QL07p001290 Quercus lobata HOM05D000009 ORTHO05D000008 5.2e-10 67.4 61 54.1
TWI32G1271 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 5.2e-10 67.4 61 52.5
TWI81G1048 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 5.2e-10 67.4 60 53.3
QL07p000998 Quercus lobata HOM05D000009 ORTHO05D000008 6.8e-10 67.0 61 55.7
Thecc.05G220600 Theobroma cacao HOM05D000009 ORTHO05D000008 6.8e-10 67.0 63 52.4
TWI59G1238 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 8.9e-10 66.6 61 55.7
Duzib128G0770 Durio zibethinus HOM05D000009 ORTHO05D016233 1.5e-09 65.9 63 54.0
PGR004G0476 Punica granatum HOM05D000009 ORTHO05D000008 1.5e-09 65.9 57 57.9
Thecc.05G221000 Theobroma cacao HOM05D000009 ORTHO05D000008 1.5e-09 65.9 63 52.4
Atru.chr1.3959 Acer truncatum HOM05D000009 ORTHO05D000008 2.0e-09 65.5 61 52.5
Prupe.7G062500 Prunus persica HOM05D000009 ORTHO05D000008 2.0e-09 65.5 66 50.0
QL06p053433 Quercus lobata HOM05D000009 ORTHO05D000008 2.0e-09 65.5 61 54.1
QL07p004278 Quercus lobata HOM05D000009 ORTHO05D000008 2.0e-09 65.5 61 47.5
RcHm_v2.0_Chr3g0482391 Rosa chinensis HOM05D000009 ORTHO05D000008 2.6e-09 65.1 55 52.7
Gohir.A02G127700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 3.4e-09 64.7 71 52.1
PGR004G2410 Punica granatum HOM05D000009 ORTHO05D000008 3.4e-09 64.7 61 54.1
Atru.chr1.3962 Acer truncatum HOM05D000009 ORTHO05D000008 5.8e-09 63.9 61 52.5
TWI38G2259 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 5.8e-09 63.9 61 52.5
Eucgr.K01715 Eucalyptus grandis HOM05D000009 ORTHO05D000008 7.5e-09 63.5 61 50.8
PGR083G0305 Punica granatum HOM05D000009 ORTHO05D000008 9.8e-09 63.2 61 55.7
Prupe.7G063000 Prunus persica HOM05D000009 ORTHO05D000008 1.7e-08 62.4 57 50.9
QL03p000889 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-08 62.4 61 45.9
QL93p0140_0018 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-08 62.4 61 45.9
Thecc.05G220900 Theobroma cacao HOM05D000009 ORTHO05D000008 2.2e-08 62.0 63 50.8
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 3.7e-08 61.2 61 52.5
Potri.018G017900 Populus trichocarpa HOM05D000009 ORTHO05D000008 3.7e-08 61.2 52 59.6
Eucgr.K02016 Eucalyptus grandis HOM05D000009 ORTHO05D000008 4.9e-08 60.8 61 47.5
TWI09G0242 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 4.9e-08 60.8 63 47.6
Potri.004G076700 Populus trichocarpa HOM05D000009 ORTHO05D000008 6.4e-08 60.5 69 47.8
Gohir.D03G053750 Gossypium hirsutum HOM05D000009 ORTHO05D000008 8.3e-08 60.1 61 45.9
Sabra17G0109000 Salix brachista HOM05D000009 ORTHO05D000008 8.3e-08 60.1 61 50.8
Thecc.05G220100 Theobroma cacao HOM05D000009 ORTHO05D000008 8.3e-08 60.1 63 49.2
Thecc.05G220500 Theobroma cacao HOM05D000009 ORTHO05D000008 8.3e-08 60.1 63 47.6
Thecc.05G220700 Theobroma cacao HOM05D000009 ORTHO05D000008 8.3e-08 60.1 63 47.6
QL07p001183 Quercus lobata HOM05D000009 ORTHO05D000008 1.1e-07 59.7 61 52.5
QL07p004092 Quercus lobata HOM05D000009 ORTHO05D000008 1.1e-07 59.7 61 44.3
TWI09G0612 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 1.1e-07 59.7 69 42.0
TWI38G1899 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 1.1e-07 59.7 63 49.2
Prupe.7G062900 Prunus persica HOM05D000009 ORTHO05D000008 1.4e-07 59.3 51 52.9
Peaxi162Scf00493g00004 Petunia axillaris HOM05D000009 ORTHO05D000008 1.9e-07 58.9 61 50.8
ECA246G2087 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.4e-07 58.5 69 40.6
Manes.09G019701 Manihot esculenta HOM05D000009 ORTHO05D000008 3.2e-07 58.2 61 47.5
Manes.09G019900 Manihot esculenta HOM05D000009 ORTHO05D000008 3.2e-07 58.2 61 47.5
arahy.Tifrunner.gnm1.ann1.DT9DNF Arachis hypogaea HOM05D000009 ORTHO05D000008 4.1e-07 57.8 47 59.6
QL10p056734 Quercus lobata HOM05D000009 ORTHO05D000008 4.1e-07 57.8 73 43.8
QL10p056779 Quercus lobata HOM05D000009 ORTHO05D000008 4.1e-07 57.8 73 43.8
QL10p056872 Quercus lobata HOM05D000009 ORTHO05D000008 4.1e-07 57.8 73 43.8
Dinv12468 Davidia involucrata HOM05D000009 ORTHO05D000008 5.4e-07 57.4 61 47.5
Dinv12469 Davidia involucrata HOM05D000009 ORTHO05D000008 5.4e-07 57.4 61 47.5
Duzib128G1810 Durio zibethinus HOM05D000009 ORTHO05D000008 5.4e-07 57.4 63 49.2
Oeu061561.1 Olea europaea HOM05D000009 ORTHO05D000008 5.4e-07 57.4 61 47.5
Solyc04g015630.2 Solanum lycopersicum HOM05D000009 ORTHO05D000008 5.4e-07 57.4 62 50.0
CiPaw.10G097100 Carya illinoinensis HOM05D000009 ORTHO05D000008 7.0e-07 57.0 53 49.1
Gohir.D05G359400 Gossypium hirsutum HOM05D053458 ORTHO05D016233 7.0e-07 57.0 64 42.2
Gorai.009G433700 Gossypium raimondii HOM05D053458 ORTHO05D016233 7.0e-07 57.0 64 42.2
TWI09G0026 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 7.0e-07 57.0 63 44.4
VMungo0720G1666 Vigna mungo HOM05D000009 ORTHO05D000008 7.0e-07 57.0 61 49.2
Glyma.19G113450 Glycine max HOM05D000009 ORTHO05D016233 9.2e-07 56.6 61 50.8
Dinv01264 Davidia involucrata HOM05D000009 ORTHO05D016233 1.2e-06 56.2 61 49.2
Dinv02314 Davidia involucrata HOM05D000009 ORTHO05D000008 1.2e-06 56.2 61 50.8
Medtr7g078640 Medicago truncatula HOM05D000009 ORTHO05D000008 1.2e-06 56.2 61 47.5
PGR004G0352 Punica granatum HOM05D000009 ORTHO05D000008 1.2e-06 56.2 59 47.5
Potri.017G143700 Populus trichocarpa HOM05D000009 ORTHO05D000008 2.0e-06 55.5 64 48.4
AUR62015711 Chenopodium quinoa HOM05D000009 ORTHO05D000008 3.5e-06 54.7 48 56.2
Haze_13588 Corylus avellana HOM05D000009 ORTHO05D000008 3.5e-06 54.7 43 62.8
Duzib106G1504 Durio zibethinus HOM05D000009 ORTHO05D000008 3.5e-06 54.7 68 44.1
Sabra09G0116900 Salix brachista HOM05D000009 ORTHO05D000008 4.6e-06 54.3 55 52.7
PGSC0003DMG400021779 Solanum tuberosum HOM05D000009 ORTHO05D000008 4.6e-06 54.3 73 41.1
Manes.09G023300 Manihot esculenta HOM05D000009 ORTHO05D000008 6.0e-06 53.9 63 46.0
PGR004G1718 Punica granatum HOM05D000009 ORTHO05D000008 6.0e-06 53.9 63 47.6


User provided reference genes

Program Settings