Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G083226 Manihot esculenta HOM05D003424 ORTHO05D004025 1.5e-53 212.6 106 100.0
Manes.09G010300 Manihot esculenta HOM05D003424 ORTHO05D004025 5.5e-53 210.7 106 99.1
Manes.03G083194 Manihot esculenta HOM05D003424 ORTHO05D004025 1.6e-52 209.1 106 98.1
Manes.03G083258 Manihot esculenta HOM05D003424 ORTHO05D004025 1.6e-52 209.1 106 98.1
Manes.03G083290 Manihot esculenta HOM05D003424 ORTHO05D004025 1.6e-52 209.1 106 98.1
Manes.03G083322 Manihot esculenta HOM05D003424 ORTHO05D004025 1.6e-52 209.1 106 98.1
Manes.09G010401 Manihot esculenta HOM05D003424 ORTHO05D004025 1.6e-52 209.1 106 98.1
Prupe.7G052700 Prunus persica HOM05D003424 ORTHO05D004025 2.6e-50 201.8 106 93.4
MD12G1083100 Malus domestica HOM05D003424 ORTHO05D004025 5.7e-50 200.7 106 92.5
MD14G1078200 Malus domestica HOM05D003424 ORTHO05D004025 5.7e-50 200.7 106 92.5
Glyma.02G187100 Glycine max HOM05D003424 ORTHO05D004025 1.7e-49 199.1 106 91.5
TWI53G0167 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 2.2e-49 198.7 106 92.5
FAN02G1912 Fragaria x ananassa HOM05D003424 ORTHO05D004025 2.8e-49 198.4 106 91.5
Gohir.A11G309600 Gossypium hirsutum HOM05D003424 ORTHO05D004025 6.3e-49 197.2 106 90.6
QL07p003998 Quercus lobata HOM05D003424 ORTHO05D004025 8.3e-49 196.8 105 90.5
Lj5g0010982 Lotus japonicus HOM05D003424 ORTHO05D004025 1.1e-48 196.4 106 90.6
FAN05G4136 Fragaria x ananassa HOM05D003424 ORTHO05D004025 1.4e-48 196.1 106 90.6
Duzib128G0558 Durio zibethinus HOM05D003424 ORTHO05D004025 1.8e-48 195.7 104 91.3
Gohir.D11G324900 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.8e-48 195.7 106 89.6
CiPaw.10G035800 Carya illinoinensis HOM05D003424 ORTHO05D004025 2.4e-48 195.3 106 91.5
Ciclev10004983m.g Citrus clementina HOM05D003424 ORTHO05D004025 2.4e-48 195.3 106 89.6
Gorai.007G355700 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.4e-48 195.3 106 88.7
TWI77G0522 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 2.4e-48 195.3 106 90.6
arahy.Tifrunner.gnm1.ann1.MH7EBB Arachis hypogaea HOM05D003424 ORTHO05D004025 3.1e-48 194.9 106 89.6
arahy.Tifrunner.gnm1.ann1.ZS3MQE Arachis hypogaea HOM05D003424 ORTHO05D004025 3.1e-48 194.9 106 89.6
Nitab4.5_0000677g0120 Nicotiana tabacum HOM05D003424 ORTHO05D004025 3.1e-48 194.9 106 90.6
Phvul.007G250100 Phaseolus vulgaris HOM05D003424 ORTHO05D004025 3.1e-48 194.9 106 89.6
VMungo0720G2843 Vigna mungo HOM05D003424 ORTHO05D004025 3.1e-48 194.9 106 89.6
Ca_12264_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 4.1e-48 194.5 106 89.6
Ca_30550_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 4.1e-48 194.5 106 89.6
Cc06_g18160 Coffea canephora HOM05D003424 ORTHO05D004025 4.1e-48 194.5 104 90.4
Cc06_g18170 Coffea canephora HOM05D003424 ORTHO05D004025 4.1e-48 194.5 104 90.4
Atru.chr1.1209 Acer truncatum HOM05D003424 ORTHO05D004025 7.0e-48 193.7 106 87.7
Gohir.D11G325000 Gossypium hirsutum HOM05D003424 ORTHO05D004025 7.0e-48 193.7 106 89.6
Gorai.007G355800 Gossypium raimondii HOM05D003424 ORTHO05D004025 7.0e-48 193.7 106 89.6
Nitab4.5_0000364g0010 Nicotiana tabacum HOM05D003424 ORTHO05D004025 7.0e-48 193.7 106 89.6
Potri.006G047600 Populus trichocarpa HOM05D003424 ORTHO05D004025 7.0e-48 193.7 106 89.6
Rhsim04G0106600 Rhododendron simsii HOM05D003424 ORTHO05D004025 9.1e-48 193.4 106 89.6
THA.LOC104801979 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 9.1e-48 193.4 106 87.7
CiPaw.09G040700 Carya illinoinensis HOM05D003424 ORTHO05D004025 1.2e-47 193.0 106 90.6
Dinv39664 Davidia involucrata HOM05D003424 ORTHO05D004025 1.2e-47 193.0 106 88.7
Hma1.2p1_0110F.1_g052940 Hydrangea macrophylla HOM05D003424 ORTHO05D004025 1.2e-47 193.0 105 88.6
Lalb_Chr08g0235181 Lupinus albus HOM05D003424 ORTHO05D004025 1.2e-47 193.0 106 89.6
Medtr1g051820 Medicago truncatula HOM05D003424 ORTHO05D004025 1.2e-47 193.0 106 89.6
Sabra16G0048600 Salix brachista HOM05D003424 ORTHO05D004025 1.2e-47 193.0 106 89.6
CANSAT80G0981 Cannabis sativa HOM05D003424 ORTHO05D004025 1.6e-47 192.6 103 91.3
CANSAT80G2233 Cannabis sativa HOM05D003424 ORTHO05D004025 1.6e-47 192.6 103 91.3
Lalb_Chr23g0274141 Lupinus albus HOM05D003424 ORTHO05D004025 1.6e-47 192.6 106 89.6
ClCG04G003770 Citrullus lanatus HOM05D003424 ORTHO05D004025 2.0e-47 192.2 106 87.7
Lsat_1_v5_gn_8_117161 Lactuca sativa HOM05D003424 ORTHO05D004025 2.0e-47 192.2 106 85.8
CAN.G1656.4 Capsicum annuum HOM05D003424 ORTHO05D004025 2.7e-47 191.8 106 87.7
Glyma.10G106100 Glycine max HOM05D003424 ORTHO05D004025 2.7e-47 191.8 106 88.7
Lalb_Chr08g0235171 Lupinus albus HOM05D003424 ORTHO05D004025 2.7e-47 191.8 106 88.7
BcaC07g40058 Brassica carinata HOM05D003424 ORTHO05D004025 3.5e-47 191.4 106 88.7
BcaC07g40060 Brassica carinata HOM05D003424 ORTHO05D004025 3.5e-47 191.4 106 88.7
COL.COLO4_36514 Corchorus olitorius HOM05D003424 ORTHO05D004025 3.5e-47 191.4 106 86.8
DCAR_020512 Daucus carota HOM05D003424 ORTHO05D004025 3.5e-47 191.4 106 87.7
A09p50210 Brassica napus HOM05D003424 ORTHO05D004025 4.5e-47 191.0 106 88.7
BraA09t40471Z Brassica rapa HOM05D003424 ORTHO05D004025 4.5e-47 191.0 106 88.7
Thhalv10005924m.g Eutrema salsugineum HOM05D003424 ORTHO05D004025 4.5e-47 191.0 106 88.7
Sp5g05310 Schrenkiella parvula HOM05D003424 ORTHO05D004025 4.5e-47 191.0 106 88.7
Sabra06G0033100 Salix brachista HOM05D003424 ORTHO05D004025 7.7e-47 190.3 106 87.7
BcaB02g08321 Brassica carinata HOM05D003424 ORTHO05D004025 1.0e-46 189.9 106 86.8
A04p03210 Brassica napus HOM05D003424 ORTHO05D004025 1.0e-46 189.9 106 86.8
BraA04t16043Z Brassica rapa HOM05D003424 ORTHO05D004025 1.0e-46 189.9 106 86.8
Cpa.g.sc182.25 Carica papaya HOM05D003424 ORTHO05D004025 1.0e-46 189.9 105 89.5
Potri.016G043800 Populus trichocarpa HOM05D003424 ORTHO05D004025 1.0e-46 189.9 106 87.7
Sc19g0008510 Simmondsia chinensis HOM05D003424 ORTHO05D004025 1.0e-46 189.9 106 86.8
ECA232G2680 Erigeron canadensis HOM05D003424 ORTHO05D004025 1.3e-46 189.5 106 84.9
Gohir.A11G309500 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.3e-46 189.5 106 86.8
AL5G38830 Arabidopsis lyrata HOM05D003424 ORTHO05D004025 1.7e-46 189.1 106 86.8
CARHR167490 Cardamine hirsuta HOM05D003424 ORTHO05D004025 1.7e-46 189.1 106 86.8
Migut.J01716 Erythranthe guttata HOM05D003424 ORTHO05D004025 1.7e-46 189.1 106 85.8
PGR004G2306 Punica granatum HOM05D003424 ORTHO05D004025 1.7e-46 189.1 106 86.8
AT3G57290 Arabidopsis thaliana HOM05D003424 ORTHO05D004025 2.2e-46 188.7 106 85.8
Thecc.05G303700 Theobroma cacao HOM05D003424 ORTHO05D004025 2.2e-46 188.7 106 85.8
MELO3C026327.2 Cucumis melo HOM05D003424 ORTHO05D004025 2.9e-46 188.3 106 85.8
Aa31LG1G23570 Aethionema arabicum HOM05D003424 ORTHO05D004025 3.8e-46 188.0 106 87.7
C08p32690 Brassica napus HOM05D003424 ORTHO05D004025 3.8e-46 188.0 106 86.8
BolC8t50881H Brassica oleracea HOM05D003424 ORTHO05D004025 3.8e-46 188.0 106 86.8
CsaV3_4G027730 Cucumis sativus L. HOM05D003424 ORTHO05D004025 3.8e-46 188.0 106 85.8
Duzib093G1716 Durio zibethinus HOM05D003424 ORTHO05D004025 3.8e-46 188.0 108 87.0
HanXRQChr09g0258441 Helianthus annuus HOM05D003424 ORTHO05D004025 3.8e-46 188.0 106 84.0
Sed0024607 Sechium edule HOM05D003424 ORTHO05D004025 5.0e-46 187.6 106 85.8
RcHm_v2.0_Chr3g0483891 Rosa chinensis HOM05D003424 ORTHO05D004025 6.5e-46 187.2 102 88.2
GSVIVG01005045001 Vitis vinifera HOM05D003424 ORTHO05D004025 6.5e-46 187.2 106 84.9
Aa31LG10G12160 Aethionema arabicum HOM05D003424 ORTHO05D004025 8.5e-46 186.8 106 85.8
MSTRG.6406 Avicennia marina HOM05D003424 ORTHO05D004025 8.5e-46 186.8 106 84.9
PGSC0003DMG400029829 Solanum tuberosum HOM05D003424 ORTHO05D004025 8.5e-46 186.8 106 86.8
Carub.0005s2414 Capsella rubella HOM05D003424 ORTHO05D004025 1.1e-45 186.4 106 84.9
SGA_v2.0_scaffold105G30370 Striga asiatica HOM05D003424 ORTHO05D004025 1.5e-45 186.0 106 84.9
Lj1C1124G13 Lonicera japonica HOM05D003424 ORTHO05D004025 1.9e-45 185.7 107 85.0
Solyc10g079880.2 Solanum lycopersicum HOM05D003424 ORTHO05D004025 1.9e-45 185.7 106 85.8
Sopen10g030490 Solanum pennellii HOM05D003424 ORTHO05D004025 1.9e-45 185.7 106 85.8
Eucgr.A02306 Eucalyptus grandis HOM05D003424 ORTHO05D004025 3.2e-45 184.9 106 83.0
TAR623G1380 Trochodendron aralioides HOM05D003424 ORTHO05D004025 4.2e-45 184.5 106 84.0
HanXRQChr08g0229101 Helianthus annuus HOM05D003424 ORTHO05D004025 7.2e-45 183.7 106 82.1
Medtr2g079780 Medicago truncatula HOM05D003424 ORTHO05D004025 7.2e-45 183.7 106 84.9
C04p35090 Brassica napus HOM05D003424 ORTHO05D004025 9.5e-45 183.3 106 84.0
BolC4t25065H Brassica oleracea HOM05D003424 ORTHO05D004025 9.5e-45 183.3 106 84.0
THA.LOC104824428 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 9.5e-45 183.3 107 85.0
AUR62026108 Chenopodium quinoa HOM05D003424 ORTHO05D004025 1.6e-44 182.6 106 84.0
Hund12364 Selenicereus undatus HOM05D003424 ORTHO05D004025 2.1e-44 182.2 101 88.1
FAN14G2785 Fragaria x ananassa HOM05D003424 ORTHO05D004025 3.6e-44 181.4 139 69.8
Sp4g23800 Schrenkiella parvula HOM05D003424 ORTHO05D004025 6.1e-44 180.6 106 83.0
Cc00_g29150 Coffea canephora HOM05D003424 ORTHO05D004025 4.0e-43 177.9 92 92.4
Migut.K00104 Erythranthe guttata HOM05D003424 ORTHO05D004025 8.8e-43 176.8 100 83.0
EL10Ac3g07146 Beta vulgaris HOM05D003424 ORTHO05D004025 2.0e-42 175.6 106 80.2
Nn2g15108 Nelumbo nucifera HOM05D003424 ORTHO05D004025 2.4e-40 168.7 105 77.1
TPR.G8064 Trifolium pratense HOM05D003424 ORTHO05D004025 1.2e-39 166.4 92 88.0
Nn7g36420 Nelumbo nucifera HOM05D003424 ORTHO05D004025 1.6e-39 166.0 105 75.2
Aqoxy2G00237 Aquilegia oxysepala HOM05D003424 ORTHO05D004025 2.0e-39 165.6 104 76.0
Oeu033903.1 Olea europaea HOM05D003424 ORTHO05D004025 1.2e-36 156.4 95 82.1
Psat5g246160 Pisum sativum HOM05D003424 ORTHO05D004025 4.0e-35 151.4 80 90.0
PSO675G6801 Papaver somniferum HOM05D003424 ORTHO05D004025 1.2e-34 149.8 99 69.7
PSO675G7866 Papaver somniferum HOM05D003424 ORTHO05D004025 1.2e-34 149.8 99 70.7
Actinidia17671 Actinidia chinensis HOM05D003424 ORTHO05D004025 8.3e-33 143.7 91 80.2
ATR0329G046 Amborella trichopoda HOM05D003424 ORTHO05D004025 1.1e-32 143.3 104 67.3
Haze_21124 Corylus avellana HOM05D003424 ORTHO05D004025 1.4e-32 142.9 87 83.9
CDE08G1324 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 3.2e-32 141.7 104 65.4
Peaxi162Scf00069g01214 Petunia axillaris HOM05D003424 ORTHO05D004025 4.1e-32 141.4 79 88.6
Pp3c20_5690 Physcomitrium patens HOM05D003424 ORTHO05D004025 7.0e-32 140.6 104 61.5
Cfa017072 Carpinus fangiana HOM05D003424 ORTHO05D004025 1.6e-31 139.4 79 89.9
Mapoly0007s0188 Marchantia polymorpha HOM05D003424 ORTHO05D004025 1.6e-31 139.4 104 63.5
Cfa000245 Carpinus fangiana HOM05D003424 ORTHO05D004025 2.7e-31 138.7 95 77.9
Cfa016772 Carpinus fangiana HOM05D003424 ORTHO05D004025 4.6e-31 137.9 80 90.0
Psat6g117080 Pisum sativum HOM05D003424 ORTHO05D004025 4.6e-31 137.9 73 90.4
SEGI_12156 Sequoiadendron giganteum HOM05D003424 ORTHO05D004025 5.9e-31 137.5 109 61.5
BcaB02g07613 Brassica carinata HOM05D003424 ORTHO05D004025 1.0e-30 136.7 100 73.0
BcaC02g09927 Brassica carinata HOM05D003424 ORTHO05D004025 1.7e-30 136.0 81 82.7
Pp3c8_15010 Physcomitrium patens HOM05D003424 ORTHO05D004025 2.3e-30 135.6 102 61.8
Os07g0222300 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 3.0e-30 135.2 108 62.0
AUR62024517 Chenopodium quinoa HOM05D003424 ORTHO05D004025 6.6e-30 134.0 79 83.5
Zm00001eb095240 Zea mays HOM05D003424 ORTHO05D004025 1.5e-29 132.9 103 60.2
Os07g0167000 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 4.3e-29 131.3 101 61.4
Ah.04g164170 Amaranthus hybridus HOM05D003424 ORTHO05D004025 9.5e-29 130.2 79 81.0
Zm00001eb303380 Zea mays HOM05D003424 ORTHO05D004025 2.8e-28 128.6 106 60.4
TAR633G0793 Trochodendron aralioides HOM05D003424 ORTHO05D004025 4.7e-28 127.9 81 72.8
CBR_g48694 Chara braunii HOM05D003424 ORTHO05D004025 8.0e-28 127.1 107 58.9
SMO223G0020 Selaginella moellendorffii HOM05D003424 ORTHO05D004025 1.8e-27 125.9 97 59.8
MCO16G302 Micromonas commoda HOM05D003424 ORTHO05D004025 5.2e-27 124.4 99 58.6
Cre12.g498100 Chlamydomonas reinhardtii HOM05D003424 ORTHO05D004025 1.3e-25 119.8 95 58.9
Haze_19783 Corylus avellana HOM05D003424 ORTHO05D004025 1.7e-25 119.4 70 88.6
PRCOL_00006598 Prasinoderma coloniale HOM05D003424 ORTHO05D004025 2.9e-25 118.6 99 56.6
HPP92_006701 Vanilla planifolia HOM05D003424 ORTHO05D004025 3.7e-25 118.2 87 63.2
Actinidia09299 Actinidia chinensis HOM05D003424 ORTHO05D004025 1.9e-24 115.9 71 80.3
Haze_26473 Corylus avellana HOM05D003424 ORTHO05D004025 7.0e-24 114.0 93 59.1
Psat5g243200 Pisum sativum HOM05D003424 ORTHO05D004025 2.0e-23 112.5 58 93.1
Os07g0503700 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 7.8e-23 110.5 99 54.5
CDE09G0956 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 5.8e-18 94.4 74 62.2
Cfa022230 Carpinus fangiana HOM05D003424 ORTHO05D004025 4.1e-16 88.2 89 48.3
vmacro09050 Vaccinium macrocarpon HOM05D003424 ORTHO05D004025 9.2e-16 87.0 72 63.9
HanXRQChr10g0303321 Helianthus annuus HOM05D000894 ORTHO05D001833 1.1e-13 80.1 46 80.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.4e-10 68.6 35 91.4
PSO210G7607 Papaver somniferum HOM05D006021 ORTHO05D007747 8.4e-09 63.9 40 67.5
FvH4_6g24580 Fragaria vesca HOM05D003424 ORTHO05D004025 4.6e-07 58.2 29 86.2


User provided reference genes

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