Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G083210 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-41 171.8 84 100.0
Manes.03G083338 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-38 161.8 84 95.2
Manes.09G010300 Manihot esculenta HOM05D003424 ORTHO05D004025 9.5e-32 139.8 73 95.9
Manes.09G010401 Manihot esculenta HOM05D003424 ORTHO05D004025 9.5e-32 139.8 73 95.9
Manes.03G083194 Manihot esculenta HOM05D003424 ORTHO05D004025 2.8e-31 138.3 73 94.5
Manes.03G083290 Manihot esculenta HOM05D003424 ORTHO05D004025 2.8e-31 138.3 73 94.5
Manes.03G083322 Manihot esculenta HOM05D003424 ORTHO05D004025 2.8e-31 138.3 73 94.5
Dinv39664 Davidia involucrata HOM05D003424 ORTHO05D004025 2.6e-29 131.7 73 86.3
arahy.Tifrunner.gnm1.ann1.MH7EBB Arachis hypogaea HOM05D003424 ORTHO05D004025 4.4e-29 131.0 73 87.7
PGR004G2306 Punica granatum HOM05D003424 ORTHO05D004025 5.8e-29 130.6 73 87.7
TWI53G0167 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 5.8e-29 130.6 73 86.3
Hma1.2p1_0110F.1_g052940 Hydrangea macrophylla HOM05D003424 ORTHO05D004025 7.5e-29 130.2 73 86.3
MELO3C026327.2 Cucumis melo HOM05D003424 ORTHO05D004025 9.8e-29 129.8 73 87.7
CsaV3_4G027730 Cucumis sativus L. HOM05D003424 ORTHO05D004025 9.8e-29 129.8 73 87.7
Phvul.007G250100 Phaseolus vulgaris HOM05D003424 ORTHO05D004025 9.8e-29 129.8 73 86.3
arahy.Tifrunner.gnm1.ann1.ZS3MQE Arachis hypogaea HOM05D003424 ORTHO05D004025 1.3e-28 129.4 72 88.9
TWI77G0522 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 1.3e-28 129.4 73 84.9
Atru.chr1.1209 Acer truncatum HOM05D003424 ORTHO05D004025 1.7e-28 129.0 73 84.9
Duzib093G1716 Durio zibethinus HOM05D003424 ORTHO05D004025 1.7e-28 129.0 73 86.3
COL.COLO4_36514 Corchorus olitorius HOM05D003424 ORTHO05D004025 2.2e-28 128.6 73 86.3
Gohir.A11G309600 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.2e-28 128.6 73 84.9
MSTRG.6406 Avicennia marina HOM05D003424 ORTHO05D004025 2.9e-28 128.3 73 84.9
Potri.006G047600 Populus trichocarpa HOM05D003424 ORTHO05D004025 2.9e-28 128.3 73 86.3
Actinidia17671 Actinidia chinensis HOM05D003424 ORTHO05D004025 3.7e-28 127.9 73 86.3
Gohir.A11G309500 Gossypium hirsutum HOM05D003424 ORTHO05D004025 3.7e-28 127.9 73 84.9
Glyma.02G187100 Glycine max HOM05D003424 ORTHO05D004025 6.4e-28 127.1 73 84.9
HanXRQChr08g0229101 Helianthus annuus HOM05D003424 ORTHO05D004025 6.4e-28 127.1 73 83.6
HanXRQChr09g0258441 Helianthus annuus HOM05D003424 ORTHO05D004025 6.4e-28 127.1 73 83.6
VMungo0720G2843 Vigna mungo HOM05D003424 ORTHO05D004025 6.4e-28 127.1 73 84.9
FvH4_6g24580 Fragaria vesca HOM05D003424 ORTHO05D004025 8.3e-28 126.7 73 84.9
Glyma.10G106100 Glycine max HOM05D003424 ORTHO05D004025 8.3e-28 126.7 73 84.9
Lsat_1_v5_gn_8_117161 Lactuca sativa HOM05D003424 ORTHO05D004025 8.3e-28 126.7 73 83.6
Sabra06G0033100 Salix brachista HOM05D003424 ORTHO05D004025 8.3e-28 126.7 73 86.3
CiPaw.10G035800 Carya illinoinensis HOM05D003424 ORTHO05D004025 1.1e-27 126.3 73 84.9
Lj5g0010982 Lotus japonicus HOM05D003424 ORTHO05D004025 1.1e-27 126.3 73 83.6
THA.LOC104801979 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 1.1e-27 126.3 73 83.6
CiPaw.09G040700 Carya illinoinensis HOM05D003424 ORTHO05D004025 1.4e-27 125.9 73 83.6
Lj1C1124G13 Lonicera japonica HOM05D003424 ORTHO05D004025 1.4e-27 125.9 73 83.6
DCAR_020512 Daucus carota HOM05D003424 ORTHO05D004025 1.9e-27 125.6 73 84.9
Gohir.D11G324900 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.9e-27 125.6 73 83.6
Prupe.7G052700 Prunus persica HOM05D003424 ORTHO05D004025 1.9e-27 125.6 73 84.9
QL07p003998 Quercus lobata HOM05D003424 ORTHO05D004025 1.9e-27 125.6 73 84.9
Sed0005407 Sechium edule HOM05D003424 ORTHO05D004025 1.9e-27 125.6 73 83.6
AUR62026108 Chenopodium quinoa HOM05D003424 ORTHO05D004025 2.4e-27 125.2 73 82.2
Sc19g0008510 Simmondsia chinensis HOM05D003424 ORTHO05D004025 2.4e-27 125.2 73 82.2
Lalb_Chr08g0235171 Lupinus albus HOM05D003424 ORTHO05D004025 3.2e-27 124.8 73 82.2
Lalb_Chr08g0235181 Lupinus albus HOM05D003424 ORTHO05D004025 3.2e-27 124.8 73 82.2
Gohir.D11G325000 Gossypium hirsutum HOM05D003424 ORTHO05D004025 4.1e-27 124.4 73 82.2
Gorai.007G355700 Gossypium raimondii HOM05D003424 ORTHO05D004025 4.1e-27 124.4 73 82.2
Gorai.007G355800 Gossypium raimondii HOM05D003424 ORTHO05D004025 4.1e-27 124.4 73 82.2
Thecc.05G303700 Theobroma cacao HOM05D003424 ORTHO05D004025 4.1e-27 124.4 73 83.6
Cfa000245 Carpinus fangiana HOM05D003424 ORTHO05D004025 5.4e-27 124.0 72 84.7
AUR62024517 Chenopodium quinoa HOM05D003424 ORTHO05D004025 5.4e-27 124.0 73 80.8
Duzib128G0558 Durio zibethinus HOM05D003424 ORTHO05D004025 5.4e-27 124.0 73 80.8
Hund12364 Selenicereus undatus HOM05D003424 ORTHO05D004025 5.4e-27 124.0 73 80.8
Hund15356 Selenicereus undatus HOM05D003424 ORTHO05D004025 5.4e-27 124.0 73 80.8
MD12G1083100 Malus domestica HOM05D003424 ORTHO05D004025 7.0e-27 123.6 73 83.6
Nn2g15108 Nelumbo nucifera HOM05D003424 ORTHO05D004025 7.0e-27 123.6 73 79.5
THA.LOC104824428 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 7.0e-27 123.6 73 80.8
BcaB02g08321 Brassica carinata HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 82.2
A04p03210 Brassica napus HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 82.2
C04p35090 Brassica napus HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 82.2
BolC4t25065H Brassica oleracea HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 82.2
BraA04t16043Z Brassica rapa HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 82.2
ECA232G2680 Erigeron canadensis HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 80.8
Lalb_Chr23g0274141 Lupinus albus HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 82.2
Psat6g117080 Pisum sativum HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 80.8
RcHm_v2.0_Chr3g0483891 Rosa chinensis HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 83.6
Sp5g05310 Schrenkiella parvula HOM05D003424 ORTHO05D004025 9.2e-27 123.2 73 82.2
Ah.04g164170 Amaranthus hybridus HOM05D003424 ORTHO05D004025 1.2e-26 122.9 72 84.7
Migut.J01716 Erythranthe guttata HOM05D003424 ORTHO05D004025 1.2e-26 122.9 73 80.8
GSVIVG01005045001 Vitis vinifera HOM05D003424 ORTHO05D004025 1.2e-26 122.9 68 88.2
Cpa.g.sc182.25 Carica papaya HOM05D003424 ORTHO05D004025 1.6e-26 122.5 68 88.2
Haze_21124 Corylus avellana HOM05D003424 ORTHO05D004025 2.0e-26 122.1 72 83.3
FAN14G2785 Fragaria x ananassa HOM05D003424 ORTHO05D004025 2.0e-26 122.1 73 82.2
Potri.016G043800 Populus trichocarpa HOM05D003424 ORTHO05D004025 2.0e-26 122.1 73 82.2
Carub.0005s2414 Capsella rubella HOM05D003424 ORTHO05D004025 2.7e-26 121.7 73 80.8
CAN.G1656.4 Capsicum annuum HOM05D003424 ORTHO05D004025 2.7e-26 121.7 73 79.5
Migut.K00104 Erythranthe guttata HOM05D003424 ORTHO05D004025 2.7e-26 121.7 73 79.5
Psat5g246160 Pisum sativum HOM05D003424 ORTHO05D004025 2.7e-26 121.7 73 79.5
SalBow6G0750 Salvia bowleyana HOM05D003424 ORTHO05D004025 2.7e-26 121.7 72 81.9
Aa31LG10G12160 Aethionema arabicum HOM05D003424 ORTHO05D004025 3.5e-26 121.3 73 79.5
AL5G38830 Arabidopsis lyrata HOM05D003424 ORTHO05D004025 3.5e-26 121.3 73 80.8
BcaC07g40060 Brassica carinata HOM05D003424 ORTHO05D004025 3.5e-26 121.3 73 80.8
CARHR167490 Cardamine hirsuta HOM05D003424 ORTHO05D004025 3.5e-26 121.3 73 80.8
Cfa016772 Carpinus fangiana HOM05D003424 ORTHO05D004025 3.5e-26 121.3 72 81.9
MD14G1078200 Malus domestica HOM05D003424 ORTHO05D004025 3.5e-26 121.3 73 80.8
Medtr2g079780 Medicago truncatula HOM05D003424 ORTHO05D004025 3.5e-26 121.3 73 79.5
TAR623G1380 Trochodendron aralioides HOM05D003424 ORTHO05D004025 3.5e-26 121.3 73 78.1
Cfa017072 Carpinus fangiana HOM05D003424 ORTHO05D004025 4.6e-26 120.9 72 81.9
Nitab4.5_0000364g0010 Nicotiana tabacum HOM05D003424 ORTHO05D004025 4.6e-26 120.9 73 79.5
AT3G57290 Arabidopsis thaliana HOM05D003424 ORTHO05D004025 6.0e-26 120.6 73 79.5
ClCG04G003770 Citrullus lanatus HOM05D003424 ORTHO05D004025 6.0e-26 120.6 83 75.9
Eucgr.A02306 Eucalyptus grandis HOM05D003424 ORTHO05D004025 6.0e-26 120.6 73 82.2
FAN02G1912 Fragaria x ananassa HOM05D003424 ORTHO05D004025 6.0e-26 120.6 72 83.3
Peaxi162Scf00069g01214 Petunia axillaris HOM05D003424 ORTHO05D004025 6.0e-26 120.6 72 81.9
Solyc10g079880.2 Solanum lycopersicum HOM05D003424 ORTHO05D004025 6.0e-26 120.6 73 78.1
Sopen10g030490 Solanum pennellii HOM05D003424 ORTHO05D004025 6.0e-26 120.6 73 78.1
PGSC0003DMG400029829 Solanum tuberosum HOM05D003424 ORTHO05D004025 6.0e-26 120.6 73 78.1
A09p50210 Brassica napus HOM05D003424 ORTHO05D004025 7.8e-26 120.2 73 80.8
BraA09t40471Z Brassica rapa HOM05D003424 ORTHO05D004025 7.8e-26 120.2 73 80.8
Haze_19783 Corylus avellana HOM05D003424 ORTHO05D004025 7.8e-26 120.2 72 80.6
Aa31LG1G23570 Aethionema arabicum HOM05D003424 ORTHO05D004025 1.0e-25 119.8 73 79.5
CANSAT80G0981 Cannabis sativa HOM05D003424 ORTHO05D004025 1.0e-25 119.8 73 79.5
CANSAT80G2233 Cannabis sativa HOM05D003424 ORTHO05D004025 1.0e-25 119.8 73 79.5
Pp3c8_15010 Physcomitrium patens HOM05D003424 ORTHO05D004025 1.0e-25 119.8 73 78.1
vmacro09050 Vaccinium macrocarpon HOM05D003424 ORTHO05D004025 1.0e-25 119.8 72 81.9
EL10Ac3g07146 Beta vulgaris HOM05D003424 ORTHO05D004025 1.3e-25 119.4 73 79.5
BolC8t50881H Brassica oleracea HOM05D003424 ORTHO05D004025 1.3e-25 119.4 73 80.8
Nitab4.5_0000677g0120 Nicotiana tabacum HOM05D003424 ORTHO05D004025 1.3e-25 119.4 73 78.1
Sabra16G0048600 Salix brachista HOM05D003424 ORTHO05D004025 1.3e-25 119.4 77 79.2
Sp4g23800 Schrenkiella parvula HOM05D003424 ORTHO05D004025 1.3e-25 119.4 73 78.1
Ciclev10004983m.g Citrus clementina HOM05D003424 ORTHO05D004025 1.7e-25 119.0 74 79.7
CDE09G1093 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 2.3e-25 118.6 71 80.3
Ca_12264_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 2.3e-25 118.6 73 78.1
Ca_30550_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 2.3e-25 118.6 73 78.1
BcaC07g40058 Brassica carinata HOM05D003424 ORTHO05D004025 3.0e-25 118.2 73 79.5
C08p32690 Brassica napus HOM05D003424 ORTHO05D004025 3.0e-25 118.2 73 79.5
Pp3c24_6740 Physcomitrium patens HOM05D003424 ORTHO05D004025 3.0e-25 118.2 73 76.7
Thhalv10005924m.g Eutrema salsugineum HOM05D003424 ORTHO05D004025 6.6e-25 117.1 73 78.1
Mapoly0007s0188 Marchantia polymorpha HOM05D003424 ORTHO05D004025 8.6e-25 116.7 73 75.3
Medtr1g051820 Medicago truncatula HOM05D003424 ORTHO05D004025 8.6e-25 116.7 73 78.1
SEGI_12156 Sequoiadendron giganteum HOM05D003424 ORTHO05D004025 1.5e-24 115.9 73 76.7
ATR0329G046 Amborella trichopoda HOM05D003424 ORTHO05D004025 4.3e-24 114.4 73 75.3
HPP92_006701 Vanilla planifolia HOM05D003424 ORTHO05D004025 9.5e-24 113.2 73 75.3
Aqoxy2G00237 Aquilegia oxysepala HOM05D003424 ORTHO05D004025 1.2e-23 112.8 73 75.3
CBR_g48694 Chara braunii HOM05D003424 ORTHO05D004025 1.6e-23 112.5 73 71.2
Nn7g36420 Nelumbo nucifera HOM05D003424 ORTHO05D004025 2.1e-23 112.1 73 76.7
FAN05G4136 Fragaria x ananassa HOM05D003424 ORTHO05D004025 2.8e-23 111.7 96 63.5
Pp3c20_5690 Physcomitrium patens HOM05D003424 ORTHO05D004025 2.8e-23 111.7 73 72.6
Cc00_g29150 Coffea canephora HOM05D003424 ORTHO05D004025 4.7e-23 110.9 68 76.5
Cc06_g18160 Coffea canephora HOM05D003424 ORTHO05D004025 4.7e-23 110.9 68 76.5
Cc06_g18170 Coffea canephora HOM05D003424 ORTHO05D004025 4.7e-23 110.9 68 76.5
SGA_v2.0_scaffold105G30370 Striga asiatica HOM05D003424 ORTHO05D004025 6.2e-23 110.5 91 64.8
Zm00001eb095240 Zea mays HOM05D003424 ORTHO05D004025 8.1e-23 110.2 73 71.2
CDE08G1224 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 1.1e-22 109.8 69 76.8
TAR633G0793 Trochodendron aralioides HOM05D003424 ORTHO05D004025 5.2e-22 107.5 73 69.9
Zm00001eb303380 Zea mays HOM05D003424 ORTHO05D004025 5.2e-22 107.5 73 68.5
Gorai.007G170700 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.0e-21 105.5 63 81.0
Rhsim04G0106600 Rhododendron simsii HOM05D003424 ORTHO05D004025 2.0e-21 105.5 101 57.4
Os07g0222300 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 3.4e-21 104.8 73 67.1
Sed0024607 Sechium edule HOM05D003424 ORTHO05D004025 8.6e-17 90.1 88 59.1
SMO223G0020 Selaginella moellendorffii HOM05D003424 ORTHO05D004025 8.6e-17 90.1 73 61.6
PSO675G7866 Papaver somniferum HOM05D003424 ORTHO05D004025 1.9e-16 89.0 67 64.2
PSO675G6801 Papaver somniferum HOM05D003424 ORTHO05D004025 3.3e-16 88.2 67 62.7
Gohir.A09G048100 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.2e-15 86.3 52 80.8
Gohir.A11G217200 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.2e-15 86.3 52 80.8
Gohir.D07G001450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.2e-15 86.3 52 80.8
Gohir.D07G228450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.2e-15 86.3 52 80.8
Gohir.D11G130650 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.2e-15 86.3 52 80.8
Gohir.D07G177400 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.8e-15 85.1 52 80.8
TPR.G29633 Trifolium pratense HOM05D003424 ORTHO05D004025 4.7e-15 84.3 55 74.5
Gohir.D06G106300 Gossypium hirsutum HOM05D003424 ORTHO05D004025 6.2e-15 84.0 52 78.8
Gohir.A09G249400 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.1e-14 83.2 52 78.8
A06p18120 Brassica napus HOM05D003424 ORTHO05D004025 1.4e-14 82.8 73 60.3
A10p04150 Brassica napus HOM05D003424 ORTHO05D004025 1.4e-14 82.8 73 60.3
BraA04t18461Z Brassica rapa HOM05D003424 ORTHO05D004025 1.4e-14 82.8 73 60.3
Gorai.010G177900 Gossypium raimondii HOM05D003424 ORTHO05D004025 1.4e-14 82.8 52 75.0
Zm00001eb131780 Zea mays HOM05D003424 ORTHO05D004025 4.0e-14 81.3 49 79.6
A08p12660 Brassica napus HOM05D003424 ORTHO05D004025 5.2e-14 80.9 73 60.3
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 2.6e-13 78.6 65 58.5
Cre12.g498100 Chlamydomonas reinhardtii HOM05D003424 ORTHO05D004025 2.4e-11 72.0 73 45.2
Oeu042058.1 Olea europaea HOM05D002157 ORTHO05D002197 7.8e-10 67.0 96 41.7
Os07g0503700 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 7.8e-10 67.0 79 49.4
BolC5t33031H Brassica oleracea HOM05D003424 ORTHO05D005993 1.3e-09 66.2 70 52.9
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 3.0e-09 65.1 70 51.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.9e-09 64.7 36 83.3
MCO16G302 Micromonas commoda HOM05D003424 ORTHO05D004025 8.7e-09 63.5 69 43.5
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 1.1e-08 63.2 64 54.7
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 1.1e-08 63.2 64 54.7
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 1.1e-08 63.2 64 54.7
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 1.1e-08 63.2 64 54.7
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 1.1e-08 63.2 64 54.7
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 2.5e-08 62.0 65 53.8
Psat4g047240 Pisum sativum HOM05D003424 ORTHO05D004025 3.3e-08 61.6 52 57.7
Os07g0167000 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 7.3e-08 60.5 38 73.7
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 3.6e-07 58.2 64 50.0
Psat5g243240 Pisum sativum HOM05D003424 ORTHO05D004025 2.4e-06 55.5 68 52.9
Haze_26473 Corylus avellana HOM05D003424 ORTHO05D004025 3.1e-06 55.1 60 38.3


User provided reference genes

Program Settings