Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 5.4e-262 907.1 460 100.0
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.3e-204 715.7 471 79.8
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.3e-199 699.9 471 79.0
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.8e-196 689.5 385 89.9
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 5.1e-196 688.0 464 80.0
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 6.7e-196 687.6 422 84.8
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.9e-195 686.0 462 79.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 5.7e-195 684.5 461 80.0
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.6e-194 682.9 463 80.1
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 8.2e-194 680.6 462 77.3
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 2.9e-191 672.2 399 85.5
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 6.5e-191 671.0 454 78.0
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.9e-190 669.5 363 93.1
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.9e-190 669.5 454 78.4
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 7.2e-190 667.5 473 75.9
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.6e-189 666.4 377 87.0
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 2.7e-189 665.6 464 76.5
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 3.0e-188 662.1 431 80.7
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 3.0e-188 662.1 409 83.4
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 6.7e-188 661.0 460 77.8
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.5e-187 659.8 380 88.7
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 4.3e-187 658.3 384 88.0
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 5.7e-187 657.9 475 75.4
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.1e-185 653.7 460 76.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 2.9e-183 645.6 456 76.8
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 3.8e-183 645.2 364 88.5
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 5.0e-183 644.8 365 88.2
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.9e-182 642.9 461 76.4
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.9e-182 642.9 461 76.4
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 3.2e-182 642.1 392 84.7
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 5.5e-182 641.3 368 86.7
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 7.2e-182 641.0 474 73.0
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.2e-182 641.0 457 76.1
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 9.4e-182 640.6 394 82.5
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.2e-181 640.2 362 87.6
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.2e-181 640.2 362 87.6
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 2.1e-181 639.4 469 73.1
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.1e-181 639.4 392 84.2
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 2.1e-181 639.4 390 83.6
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 3.6e-181 638.6 367 87.7
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 6.1e-181 637.9 462 73.6
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 6.1e-181 637.9 390 83.3
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 7.9e-181 637.5 350 91.4
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 7.9e-181 637.5 361 88.1
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 7.9e-181 637.5 458 73.8
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.4e-180 636.7 362 87.3
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.4e-180 636.7 468 73.5
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 1.8e-180 636.3 391 83.4
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 3.0e-180 635.6 368 84.8
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 3.9e-180 635.2 506 69.4
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 6.7e-180 634.4 365 86.6
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-179 633.6 355 88.5
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-179 633.6 355 88.5
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.1e-179 633.6 368 84.5
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.5e-179 633.3 370 86.2
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.0e-179 632.9 346 90.2
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 3.3e-179 632.1 362 88.1
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 7.4e-179 630.9 386 83.7
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 2.8e-178 629.0 392 82.9
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 2.8e-178 629.0 415 79.5
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 4.8e-178 628.2 433 74.6
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.1e-177 627.1 375 84.3
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.4e-177 626.7 467 72.6
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 3.1e-177 625.5 365 85.2
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 7.0e-177 624.4 455 73.6
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 9.1e-177 624.0 455 73.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.6e-176 623.2 390 81.3
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.6e-176 623.2 455 73.4
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 2.0e-176 622.9 453 72.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 2.6e-176 622.5 416 75.7
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 5.9e-176 621.3 460 72.8
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 3.8e-175 618.6 379 83.6
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.2e-174 615.5 461 72.0
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 5.5e-174 614.8 461 72.0
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 5.5e-174 614.8 388 79.9
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.6e-173 613.2 361 83.9
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.0e-172 610.5 455 71.6
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.0e-172 610.5 388 79.4
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.4e-172 610.1 344 87.8
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.8e-172 609.8 350 86.6
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 4.0e-172 608.6 357 85.2
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 5.2e-172 608.2 392 80.4
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 6.7e-172 607.8 351 86.0
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.5e-171 606.7 411 76.6
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.0e-171 606.3 361 83.1
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 2.8e-170 602.4 343 87.8
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.8e-169 599.7 365 82.7
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 9.1e-169 597.4 461 69.2
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.0e-168 596.3 477 66.2
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.5e-168 595.1 426 75.1
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 8.5e-167 590.9 387 79.6
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 4.2e-166 588.6 462 69.9
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 5.5e-166 588.2 338 86.7
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.8e-164 583.2 342 86.5
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.5e-163 580.1 428 70.6
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 5.9e-160 568.2 468 68.2
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 2.5e-158 562.8 314 90.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.3e-156 556.2 388 75.3
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.2e-154 549.7 298 90.6
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.4e-153 547.0 333 84.1
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.2e-152 543.9 434 68.0
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.3e-151 539.7 361 74.5
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.5e-150 537.0 307 87.0
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.1e-145 520.8 354 73.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.4e-145 520.4 388 67.8
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 4.1e-145 518.8 314 79.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 5.4e-145 518.5 370 70.0
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 5.9e-144 515.0 344 73.5
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.1e-142 510.8 303 84.2
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.2e-136 490.7 396 64.1
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.3e-135 487.3 472 60.4
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 8.6e-135 484.6 270 90.0
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-134 484.2 339 72.0
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 3.4e-131 472.6 306 80.7
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 9.5e-126 454.5 260 86.5
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.6e-125 453.8 375 68.3
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.1e-121 441.0 268 81.7
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.2e-117 427.6 251 84.5
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 9.6e-102 374.8 402 57.0
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 4.0e-100 369.4 283 73.1
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 4.0e-92 342.8 272 68.8
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 4.6e-80 302.8 180 85.0
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.8e-76 290.8 347 45.8
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 2.5e-73 280.4 335 46.0
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 8.2e-69 265.4 356 49.4
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.9e-65 254.2 143 88.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.2e-63 246.1 132 90.2
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.3e-58 231.5 120 92.5
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.7e-56 223.8 334 35.6
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.3e-50 204.9 374 38.0
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 9.8e-46 188.7 109 84.4
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.6e-40 171.4 109 81.7
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.7e-37 160.2 180 55.6
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 4.3e-33 146.7 128 63.3
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 2.3e-31 141.0 79 89.9
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 6.8e-31 139.4 109 68.8
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.6e-30 137.5 84 84.5
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 5.8e-30 136.3 101 68.3
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 6.4e-29 132.9 84 75.0
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.3e-26 124.4 75 81.3
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-26 124.4 75 81.3
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.3e-26 124.4 75 81.3
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.5e-25 120.9 64 92.2
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 5.6e-25 119.8 187 38.0
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 9.5e-25 119.0 75 77.3
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 9.5e-25 119.0 75 77.3
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 3.6e-24 117.1 75 76.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 2.4e-20 104.4 64 81.2
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 4.0e-15 87.0 82 57.3
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 2.6e-14 84.3 44 93.2
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 2.6e-14 84.3 54 81.5
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 3.0e-10 70.9 67 55.2
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.1e-09 68.9 36 94.4
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 9.5e-09 65.9 35 85.7
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 9.5e-09 65.9 63 55.6
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 4.7e-08 63.5 37 78.4
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 8.1e-08 62.8 35 82.9


User provided reference genes

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