Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 0.0e+00 1162.1 564 100.0
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 7.9e-308 1059.7 561 90.4
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.7e-307 1056.6 564 89.7
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.7e-305 1050.8 561 89.8
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 6.3e-305 1050.0 561 89.3
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 561 89.5
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 9.1e-304 1046.2 561 89.1
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 8.5e-302 1039.6 557 89.4
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 561 88.2
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 561 88.4
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 561 88.1
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 561 88.2
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 561 87.9
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 3.6e-300 1034.2 561 87.9
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 4.7e-300 1033.9 561 88.4
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.3e-299 1031.6 561 87.7
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 561 87.2
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 561 87.7
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 562 87.2
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 5.2e-299 1030.4 561 88.1
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.5e-298 1028.9 561 87.3
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.5e-298 1028.9 561 87.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 561 87.7
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 561 87.0
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 561 87.2
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 561 87.2
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 9.7e-298 1026.2 562 87.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 2.8e-297 1024.6 564 87.4
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 8.2e-297 1023.1 561 87.7
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 8.2e-297 1023.1 561 87.0
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 561 87.2
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.8e-296 1021.9 561 87.0
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 561 87.0
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 561 86.5
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 3.1e-296 1021.1 557 87.8
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 3.1e-296 1021.1 561 86.3
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 5.3e-296 1020.4 561 87.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 7.0e-296 1020.0 561 86.8
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 9.1e-296 1019.6 561 86.8
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 9.1e-296 1019.6 561 86.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 561 86.6
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 561 85.7
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 561 85.7
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.7e-295 1018.1 552 87.3
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 561 86.6
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 561 86.6
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 7.7e-295 1016.5 561 86.6
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.0e-294 1016.1 561 86.6
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.2e-294 1015.0 561 87.0
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 2.9e-294 1014.6 552 87.3
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.8e-294 1014.2 561 86.1
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 561 85.7
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 6.5e-294 1013.4 561 86.5
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 8.5e-294 1013.1 561 86.3
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 8.5e-294 1013.1 561 86.6
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 561 85.7
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 566 85.3
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.7e-292 1008.1 561 84.7
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 562 85.8
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 561 84.8
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 561 84.7
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 561 84.7
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 561 84.5
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.3e-289 999.2 561 85.6
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.7e-289 998.8 562 85.1
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 4.1e-288 994.2 562 84.3
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.0e-288 993.4 562 84.9
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.2e-287 992.6 561 82.9
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.0e-287 991.9 562 84.5
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.5e-287 991.1 557 84.9
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.5e-287 991.1 552 84.6
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 5.9e-287 990.3 554 85.0
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.8e-286 987.6 559 83.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 6.5e-286 986.9 561 82.4
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.5e-285 985.7 550 84.5
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.5e-285 984.9 550 84.9
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.5e-285 984.9 561 82.9
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.2e-285 984.6 551 84.8
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 7.2e-285 983.4 562 84.0
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 2.8e-284 981.5 562 83.6
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.0e-283 979.5 562 82.6
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.8e-283 978.8 549 84.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 3.0e-283 978.0 561 82.5
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.4e-282 974.5 549 84.0
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.7e-281 972.2 562 82.2
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 6.3e-281 970.3 562 82.0
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 8.3e-281 969.9 562 81.7
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-280 969.5 561 83.2
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.8e-280 968.8 562 81.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-280 968.4 562 82.0
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 3.1e-280 968.0 562 82.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.1e-280 968.0 534 85.6
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 4.1e-280 967.6 562 81.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 4.1e-280 967.6 562 81.9
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.1e-280 967.6 562 81.9
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 7.0e-280 966.8 562 82.0
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 7.0e-280 966.8 562 82.0
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 7.0e-280 966.8 562 82.0
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 7.0e-280 966.8 562 82.0
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-279 966.1 563 82.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.6e-279 965.7 563 81.5
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.6e-279 965.7 561 81.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 2.7e-279 964.9 562 81.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 4.5e-279 964.1 562 81.5
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.5e-279 964.1 556 81.8
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.5e-279 964.1 562 81.7
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.7e-278 962.2 562 81.5
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.7e-278 962.2 565 81.2
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.3e-278 961.8 561 80.7
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-278 960.7 563 81.2
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.6e-278 959.9 552 82.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 7.3e-277 956.8 562 80.1
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 9.5e-277 956.4 563 81.2
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.5e-277 956.4 563 81.2
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.1e-276 955.3 562 80.4
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.8e-276 954.9 563 80.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.0e-275 953.0 558 82.1
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.0e-275 951.4 562 80.8
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 2.6e-274 948.3 551 80.6
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.7e-274 947.2 559 80.1
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.9e-273 944.9 554 80.5
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.9e-273 944.1 561 79.3
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.2e-271 939.5 554 79.6
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 8.6e-270 933.3 553 80.5
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.1e-268 928.7 556 78.4
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 8.0e-268 926.8 564 80.1
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.7e-265 917.9 561 78.3
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.1e-260 900.2 561 76.3
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-257 892.1 562 76.5
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.9e-257 891.0 560 75.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-256 889.4 524 80.3
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 5.1e-254 880.9 557 76.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 5.6e-253 877.5 553 77.0
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 2.6e-250 868.6 568 73.1
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 8.4e-249 863.6 561 73.3
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 8.4e-249 863.6 557 77.6
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 3.3e-245 851.7 563 73.7
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.6e-244 849.4 561 72.5
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.1e-236 822.4 466 81.5
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 7.4e-221 770.8 418 89.0
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.6e-210 734.2 425 81.4
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-205 720.3 561 65.1
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.6e-202 709.1 561 64.5
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.4e-187 659.4 373 81.8
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.6e-178 630.2 541 55.5
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.5e-168 595.1 417 72.2
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.8e-166 590.1 327 82.0
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.9e-164 582.0 488 54.3
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 8.6e-161 571.2 526 51.7
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.2e-154 550.8 290 86.6
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.4e-148 528.5 418 58.6
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.9e-137 492.7 552 50.9
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.3e-136 488.4 559 50.6
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 3.1e-134 483.0 318 73.3
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.8e-124 449.5 466 53.4
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 9.1e-86 322.0 211 72.5
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 3.2e-83 313.5 491 35.6
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-79 300.4 549 37.0
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 4.2e-67 260.0 152 75.7
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 3.0e-65 253.8 152 73.7
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 7.2e-59 232.6 166 65.7
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.3e-49 201.1 133 77.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.5e-48 196.1 128 78.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-46 192.2 115 79.1
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-44 183.3 166 60.8
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-43 181.4 166 60.8
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.5e-43 181.0 117 69.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 3.3e-43 180.6 166 60.8
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 3.6e-42 177.2 166 60.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 3.1e-41 174.1 320 33.1
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.5e-35 155.2 498 26.3
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.7e-31 141.7 87 72.4
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-29 133.3 213 41.3
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.6e-28 129.8 82 72.0
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 4.7e-26 123.6 75 68.0
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 3.7e-23 114.0 90 57.8
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-22 111.7 184 41.3
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-20 105.1 166 41.6
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.1e-17 94.4 56 66.1
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.5e-11 75.5 46 67.4
THA.LOC104819113 Tarenaya hassleriana HOM05D000597 ORTHO05D000603 3.2e-06 57.8 172 24.4
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 9.3e-06 56.2 72 50.0


User provided reference genes

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