Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 2203.7 1120 100.0
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1616.3 1128 73.3
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1605.9 1143 72.0
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1514.6 1125 68.9
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1493.4 1110 68.6
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1492.2 1125 67.8
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1489.9 1122 68.7
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1468.0 1128 66.6
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1454.9 1130 66.4
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1446.4 1135 66.1
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1445.6 1145 66.4
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1439.5 1133 66.4
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1429.8 1131 66.4
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1428.7 1129 65.5
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1427.5 1133 65.5
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1423.3 1135 64.9
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1423.3 1133 65.0
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1422.9 1133 65.2
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1421.4 1134 65.2
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1420.2 1128 65.0
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1417.9 1128 64.9
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1416.4 1144 65.2
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1416.0 1134 64.9
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1414.4 1157 64.4
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1414.1 1134 65.0
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1412.1 1128 64.6
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1391.7 1157 63.5
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1380.9 1132 63.5
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1364.0 1130 63.9
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1349.0 1139 63.2
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1347.4 1137 62.7
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1346.6 1170 61.0
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1345.1 1136 62.8
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1343.9 1138 63.6
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1340.5 1134 62.7
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1335.9 1133 62.6
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1335.1 1137 60.8
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1332.4 1125 62.5
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1331.2 1123 62.8
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1322.0 1136 61.4
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1320.4 1125 62.0
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1317.4 1121 61.4
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1315.8 1124 62.0
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1306.2 1126 60.9
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1304.3 1139 59.4
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1303.9 1130 61.0
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1299.6 1128 61.6
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1295.8 1141 59.5
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1292.3 1130 60.6
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1283.1 1143 59.1
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1260.4 1131 58.8
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1259.2 1120 59.7
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1259.2 1135 58.8
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1258.0 1143 58.4
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1257.7 1135 58.9
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1253.4 1131 58.8
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1250.7 1137 58.4
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1248.0 1138 58.9
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1246.9 1132 58.6
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1243.0 1131 58.4
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1238.4 1134 58.2
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1238.0 1086 61.9
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1237.2 1135 58.4
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1236.5 1076 60.2
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1223.0 1126 58.5
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1221.8 1017 62.6
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1221.1 1136 57.5
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1221.1 1134 58.4
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1219.9 1135 57.7
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1216.4 1137 57.7
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1213.4 1129 57.6
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1206.0 1150 56.3
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1203.7 1151 57.3
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1198.7 1129 56.7
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1194.9 1146 56.5
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1191.4 1125 57.1
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1187.9 1140 57.1
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1186.0 1145 56.3
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1184.9 1140 55.5
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1184.1 1122 57.0
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1184.1 1122 57.0
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1181.0 1123 56.5
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1179.5 1123 56.6
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1158.3 1156 55.5
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1119.8 1028 57.8
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 0.0e+00 1114.4 1145 53.7
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1104.0 1170 52.7
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 0.0e+00 1097.4 1108 54.0
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 0.0e+00 1095.5 1143 53.7
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 4.3e-289 998.4 900 59.2
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 8.1e-288 994.2 1114 51.1
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 2.1e-267 926.4 767 61.1
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 4.1e-263 912.1 639 71.2
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.3e-261 907.1 656 69.8
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 2.0e-254 883.2 1139 45.7
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 9.4e-252 874.4 1127 45.1
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 9.8e-233 811.2 641 65.1
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 2.8e-232 809.7 642 66.0
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 8.9e-218 761.5 1215 38.8
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 7.0e-215 751.9 559 68.3
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 1.2e-214 751.1 644 61.0
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.7e-214 750.0 1153 41.0
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 1.0e-213 748.0 610 64.6
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 8.6e-205 718.4 1224 37.7
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 6.8e-202 708.8 561 64.2
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 5.6e-180 636.0 640 52.7
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.5e-175 619.4 713 48.8
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.0e-173 613.6 483 66.7
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 1.2e-169 601.7 463 67.0
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.1e-158 564.3 514 58.8
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 2.6e-153 547.4 477 61.0
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.3e-79 300.8 740 34.9
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.2e-78 299.3 515 37.1
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-78 298.9 578 36.0
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 3.6e-78 297.7 1599 23.9
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.2e-73 282.7 253 57.3
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 4.8e-70 270.8 482 36.3
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 2.4e-66 258.5 552 33.2
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-65 254.6 581 32.4
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 3.0e-64 251.5 510 33.9
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 6.9e-61 240.4 382 42.4
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 8.2e-54 216.9 226 50.9
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 6.5e-51 207.2 673 28.7
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 6.5e-51 207.2 673 28.7
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-50 206.5 254 46.5
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 6.3e-46 190.7 186 53.8
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 8.5e-43 180.3 366 36.6
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 6.7e-40 170.6 233 42.5
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 4.1e-37 161.4 201 48.3
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 3.8e-35 154.8 201 44.8
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 2.7e-33 148.7 227 41.9
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 4.7e-33 147.9 189 45.0
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-28 133.3 123 55.3
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 4.2e-26 124.8 79 75.9
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-23 116.3 241 33.2
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-23 114.4 284 32.0
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-23 114.4 284 32.0
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 8.5e-19 100.5 53 86.8
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 1.6e-17 96.3 121 45.5
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 4.7e-17 94.7 138 42.8
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 1.7e-14 86.3 58 65.5
SHI38853 Sapria himalayana HOM05D004911 ORTHO05D005930 8.2e-14 84.0 254 29.9
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-12 79.3 59 62.7
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 3.8e-11 75.1 150 36.7
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 1.1e-10 73.6 67 58.2
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 6.8e-08 64.3 92 39.1
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 6.3e-06 57.8 100 36.0


User provided reference genes

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