Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.7e-145 518.8 296 100.0
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.8e-130 469.5 306 83.3
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.5e-121 438.7 294 85.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 5.9e-121 438.0 306 82.7
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-119 433.3 304 82.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 3.3e-119 432.2 296 84.1
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 4.7e-118 428.3 304 82.9
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 8.9e-117 424.1 306 81.4
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.6e-116 422.5 306 81.0
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 9.8e-116 420.6 299 82.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 9.8e-116 420.6 294 82.7
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.7e-115 418.7 294 72.1
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 8.3e-115 417.5 304 80.9
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.3e-115 417.5 295 79.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.1e-114 417.2 307 79.2
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.9e-114 416.4 308 68.2
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.4e-114 414.8 305 78.4
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.6e-113 413.3 309 81.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.7e-113 412.5 309 80.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 7.8e-113 411.0 307 76.9
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.0e-112 410.6 297 79.8
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.7e-112 409.8 312 78.8
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 3.0e-112 409.1 306 80.1
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.1e-111 407.1 304 80.6
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.1e-111 407.1 305 80.7
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.5e-111 406.8 307 67.4
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 5.6e-111 404.8 307 76.2
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 9.5e-111 404.1 305 76.7
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.6e-110 402.1 320 73.4
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.8e-109 399.8 307 72.0
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.8e-109 399.8 300 81.0
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 5.2e-109 398.3 295 69.8
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 6.8e-109 397.9 311 78.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.5e-108 396.7 298 68.5
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.7e-107 393.3 301 68.8
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.7e-107 392.1 298 67.4
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.9e-107 391.7 311 78.5
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 8.3e-107 391.0 306 78.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 8.3e-107 391.0 307 78.5
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.1e-106 390.6 309 68.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.4e-106 390.2 309 68.3
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.9e-106 389.8 307 66.4
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.4e-106 389.4 304 77.3
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.4e-106 389.4 307 72.6
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.2e-106 389.0 309 68.6
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 4.1e-106 388.7 299 77.3
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 9.2e-106 387.5 309 68.3
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.2e-105 387.1 313 65.8
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.1e-105 386.3 307 75.6
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 2.7e-105 386.0 309 68.3
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 6.0e-105 384.8 306 74.5
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 7.8e-105 384.4 314 64.3
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.3e-104 383.6 307 69.4
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.7e-104 383.3 307 74.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.3e-104 382.9 300 66.0
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.3e-104 382.9 297 74.7
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.3e-103 379.0 337 70.3
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 9.5e-103 377.5 307 75.2
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.6e-102 376.7 310 64.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.6e-102 376.7 307 72.3
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 6.2e-102 374.8 311 67.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.4e-101 373.6 308 64.9
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.3e-101 372.9 308 64.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 4.0e-101 372.1 308 64.3
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 5.2e-101 371.7 317 73.2
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 5.8e-100 368.2 307 63.8
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.9e-100 367.5 310 70.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.3e-99 367.1 309 73.1
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.9e-99 365.9 285 76.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 2.9e-99 365.9 313 74.1
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.9e-98 363.2 306 74.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 5.4e-98 361.7 318 68.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.7e-97 359.4 297 76.4
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.5e-97 359.0 310 70.3
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 3.5e-97 359.0 295 63.1
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.0e-96 355.9 320 70.6
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.5e-95 353.6 319 67.4
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-95 353.2 308 61.0
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 7.3e-95 351.3 342 59.1
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.8e-94 349.4 281 79.0
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 3.6e-94 349.0 305 63.9
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.6e-94 349.0 297 72.7
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 4.0e-93 345.5 297 73.1
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 4.4e-92 342.0 355 59.4
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 4.4e-92 342.0 355 59.4
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.2e-91 339.7 261 80.1
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.4e-90 337.0 320 66.6
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.9e-90 336.7 319 66.5
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.4e-90 336.3 282 77.7
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 5.4e-90 335.1 290 74.5
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.2e-89 334.0 307 62.5
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.2e-89 334.0 298 58.1
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 3.5e-89 332.4 282 72.7
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 9.6e-87 324.3 274 73.0
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 3.1e-85 319.3 349 59.9
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 3.1e-85 319.3 349 59.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.1e-85 319.3 311 67.5
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.0e-84 316.6 305 56.4
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.5e-84 315.5 284 73.2
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.2e-83 313.2 323 61.3
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 6.4e-83 311.6 308 56.5
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 8.4e-83 311.2 338 52.1
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.9e-82 310.1 256 78.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.1e-82 308.1 256 78.1
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.6e-81 307.0 215 83.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.0e-80 304.3 241 80.9
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.3e-80 303.9 257 62.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 6.7e-80 301.6 215 84.2
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 9.9e-76 287.7 271 59.8
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 8.4e-75 284.6 231 64.9
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.9e-74 283.5 263 60.5
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 3.9e-72 275.8 231 64.5
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.6e-70 270.4 219 78.5
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.8e-69 266.9 197 85.3
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-68 264.2 296 52.4
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.4e-66 257.3 233 74.2
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.5e-66 256.5 233 74.2
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 3.9e-64 249.2 235 73.6
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.5e-63 247.3 250 57.2
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.3e-62 244.2 241 74.3
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.2e-60 237.7 243 67.1
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 7.6e-60 235.0 237 55.7
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.5e-59 231.9 231 70.6
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-58 230.7 224 58.0
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.4e-58 230.7 224 58.0
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.4e-58 230.7 129 85.3
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 3.2e-58 229.6 297 50.5
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.6e-57 226.1 233 70.4
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 8.7e-56 221.5 242 54.1
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.1e-55 221.1 236 68.6
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.5e-50 203.4 233 60.1
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.5e-47 194.1 246 62.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.7e-46 190.7 285 53.0
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.2e-46 190.3 286 42.7
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 3.7e-46 189.5 154 83.8
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 5.3e-45 185.7 290 40.7
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.0e-44 183.7 146 79.5
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.4e-44 183.0 326 46.3
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 6.5e-43 178.7 179 54.7
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-37 159.8 161 57.8
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.2e-35 153.7 113 61.9
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-34 151.4 146 73.3
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.5e-34 150.2 74 89.2
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.6e-28 131.0 245 38.4
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.3e-27 127.9 73 72.6
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 2.5e-26 123.6 73 76.7
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.7e-22 110.9 87 66.7
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 2.7e-20 103.6 58 72.4
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.7e-20 102.1 167 42.5
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 3.6e-17 93.2 132 34.8
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.1e-17 92.4 88 56.8
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 5.2e-16 89.4 141 39.7
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 6.8e-16 89.0 50 70.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 8.3e-14 82.0 79 59.5
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 4.0e-08 63.2 92 41.3
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 5.2e-08 62.8 100 39.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 4.4e-07 59.7 47 66.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.7e-06 56.6 113 38.1


User provided reference genes

Program Settings