Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 9.2e-107 390.2 191 100.0
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 1.8e-65 253.1 200 68.0
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 6.2e-55 218.0 197 60.4
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 1.2e-53 213.8 195 58.5
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 5.8e-53 211.5 195 57.9
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 3.2e-51 205.7 200 57.5
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 4.8e-47 191.8 200 54.0
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 3.4e-45 185.7 198 52.5
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 5.9e-45 184.9 190 53.7
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 5.0e-44 181.8 191 52.9
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 1.9e-43 179.9 191 53.9
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 1.3e-41 173.7 196 48.0
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 1.1e-40 170.6 199 48.7
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 2.5e-40 169.5 197 49.2
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 4.8e-39 165.2 196 48.0
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 3.1e-38 162.5 196 47.4
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 4.1e-38 162.2 193 49.2
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 4.1e-38 162.2 196 46.9
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 5.3e-38 161.8 201 47.3
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 5.3e-38 161.8 199 49.7
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 5.9e-37 158.3 212 47.6
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 7.7e-37 157.9 201 45.8
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 1.0e-36 157.5 202 48.0
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 1.3e-36 157.1 201 45.3
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 1.7e-36 156.8 170 49.4
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 2.9e-36 156.0 165 52.7
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 8.5e-36 154.5 177 48.6
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 2.5e-35 152.9 198 49.5
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 5.5e-35 151.8 201 46.3
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 5.5e-35 151.8 201 46.3
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 7.2e-35 151.4 201 46.3
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 9.4e-35 151.0 170 50.0
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.6e-34 150.2 201 45.8
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 3.6e-34 149.1 177 49.7
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 6.1e-34 148.3 195 46.7
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 2.3e-33 146.4 173 46.8
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 1.1e-32 144.1 198 44.9
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 1.7e-31 140.2 197 46.2
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 4.8e-31 138.7 194 43.8
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 1.4e-30 137.1 192 44.3
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.8e-30 136.7 223 39.9
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 9.1e-30 134.4 215 40.5
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 2.6e-29 132.9 173 45.7
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 5.9e-29 131.7 195 43.1
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 5.9e-29 131.7 199 42.7
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 1.3e-28 130.6 216 39.4
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 3.8e-28 129.0 195 41.5
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 5.0e-28 128.6 198 42.4
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 5.0e-28 128.6 201 42.8
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 8.5e-28 127.9 217 40.6
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 8.5e-28 127.9 199 43.2
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 1.1e-27 127.5 198 41.4
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 1.1e-27 127.5 219 37.9
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 2.5e-27 126.3 199 43.2
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 4.2e-27 125.6 202 42.6
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 4.2e-27 125.6 176 42.0
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 5.5e-27 125.2 200 42.0
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 1.2e-26 124.0 195 44.1
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 2.1e-26 123.2 198 40.4
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 2.7e-26 122.9 198 40.9
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 3.6e-26 122.5 179 40.8
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 6.1e-26 121.7 195 43.6
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 6.1e-26 121.7 199 40.7
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.0e-25 120.9 195 42.6
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 1.0e-25 120.9 195 42.6
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 1.4e-25 120.6 198 40.9
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 1.4e-25 120.6 191 42.9
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 1.8e-25 120.2 193 41.5
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 5.2e-25 118.6 193 39.4
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 6.7e-25 118.2 178 41.0
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 2.6e-24 116.3 225 38.2
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 1.1e-22 110.9 224 36.6
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 1.8e-22 110.2 194 41.2
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 4.1e-22 109.0 140 46.4
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 1.6e-21 107.1 167 41.3
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 1.3e-20 104.0 168 40.5
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 2.2e-20 103.2 179 37.4
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 3.8e-20 102.4 227 36.1
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 6.5e-20 101.7 165 38.8
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 6.5e-20 101.7 164 39.0
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.1e-19 100.9 150 40.7
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.9e-19 100.1 164 39.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 3.2e-19 99.4 159 38.4
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 1.2e-18 97.4 163 36.8
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.2e-18 97.4 159 37.1
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 1.6e-18 97.1 162 35.2
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 2.7e-18 96.3 191 36.6
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 1.0e-17 94.4 169 37.9
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.0e-16 90.1 176 35.2
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 5.7e-16 88.6 171 40.9
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 5.9e-13 78.6 168 35.1
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.3e-12 77.4 204 32.4
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 2.7e-10 69.7 70 54.3
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 1.8e-09 67.0 96 41.7
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 1.5e-08 63.9 41 73.2
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 2.6e-08 63.2 61 49.2
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 4.4e-08 62.4 61 52.5
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.7e-07 60.5 59 49.2
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 6.3e-07 58.5 29 86.2
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 8.3e-07 58.2 61 45.9


User provided reference genes

Program Settings