Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 0.0e+00 1123.6 574 100.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 9.7e-253 876.7 588 77.6
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 5.4e-227 791.2 555 72.6
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 7.5e-213 744.2 560 67.7
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 7.5e-213 744.2 495 73.1
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.7e-212 743.0 502 73.3
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.7e-209 733.0 507 72.4
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 3.9e-209 731.9 554 67.0
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 5.0e-209 731.5 485 74.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.5e-208 729.9 501 71.7
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.9e-208 729.6 484 74.4
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.3e-208 728.8 554 65.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.6e-207 726.5 535 69.3
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 7.5e-205 717.6 498 70.9
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 9.8e-205 717.2 495 71.9
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.3e-204 716.8 521 68.5
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.3e-204 716.8 490 71.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.2e-204 716.1 548 65.7
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.9e-204 715.7 471 73.2
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.4e-204 714.5 521 68.3
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.1e-203 713.8 521 68.1
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 4.1e-203 711.8 496 71.0
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.2e-202 710.3 483 70.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 2.1e-202 709.5 489 71.0
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.1e-202 709.5 555 64.1
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.9e-201 705.3 495 69.3
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 3.3e-200 702.2 495 69.9
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.2e-199 700.3 528 66.3
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.2e-199 700.3 495 69.5
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.6e-199 699.9 497 69.0
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.6e-199 699.9 491 70.9
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.6e-199 699.9 491 70.1
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.1e-199 699.5 504 69.0
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.8e-199 699.1 514 68.9
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.8e-199 699.1 495 69.5
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 8.1e-199 697.6 492 69.9
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.4e-198 696.8 497 69.0
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.8e-198 696.4 511 67.1
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.5e-197 693.3 498 70.5
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 4.4e-197 691.8 522 66.9
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.3e-196 690.3 509 66.8
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.2e-196 689.5 498 69.3
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.4e-195 686.8 489 68.9
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.4e-195 686.0 579 62.0
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.1e-195 685.3 572 61.7
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 3.5e-194 682.2 516 68.0
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 6.6e-193 677.9 561 62.9
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.6e-193 677.9 488 68.6
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.1e-192 677.2 484 68.4
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 5.6e-192 674.9 418 78.9
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.6e-191 673.3 493 67.1
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.1e-191 672.9 496 68.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-190 670.6 487 68.2
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.8e-190 669.8 603 58.7
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 8.9e-190 667.5 486 69.3
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 8.9e-190 667.5 500 66.4
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 8.9e-190 667.5 485 67.2
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 2.0e-189 666.4 485 68.5
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 3.4e-189 665.6 485 67.2
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 5.8e-189 664.8 486 66.5
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 6.4e-188 661.4 556 61.5
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.9e-187 659.8 505 64.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.3e-185 653.7 488 67.2
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.3e-185 652.9 487 65.5
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 5.1e-185 651.7 511 64.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.8e-183 646.0 495 65.3
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.1e-182 642.5 474 67.9
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 4.0e-182 642.1 552 59.1
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 4.0e-182 642.1 487 64.5
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 2.0e-181 639.8 594 57.2
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 3.4e-181 639.0 578 57.8
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.1e-179 634.0 484 65.1
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 7.1e-179 631.3 485 63.7
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.4e-174 617.1 485 63.3
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.1e-174 615.9 503 61.8
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.7e-172 610.1 493 63.9
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.9e-172 609.4 490 63.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.9e-171 606.7 488 63.9
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.4e-171 606.3 496 62.9
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 2.4e-171 606.3 487 63.9
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 7.9e-170 601.3 510 59.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 5.6e-168 595.1 494 59.7
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.1e-167 591.3 493 62.1
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-165 586.3 487 60.4
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 2.6e-165 586.3 525 59.6
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.7e-164 583.6 486 60.1
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.8e-164 582.4 492 60.0
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.7e-162 576.2 490 57.8
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.5e-162 575.9 492 59.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.0e-162 575.1 497 61.4
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.9e-162 574.7 494 59.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.3e-160 569.3 466 61.2
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.6e-159 567.0 485 58.6
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.5e-157 560.5 488 59.4
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-155 554.3 487 56.5
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.4e-155 553.9 493 57.0
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.7e-154 549.7 401 69.1
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.6e-154 548.9 496 56.9
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 5.7e-152 542.0 486 57.6
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.4e-150 537.3 456 57.5
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 9.1e-150 534.6 453 61.8
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 3.4e-149 532.7 517 57.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.4e-147 527.3 494 56.3
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.6e-146 522.3 377 69.8
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.5e-144 517.3 492 54.7
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.1e-142 509.6 489 56.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 4.2e-139 499.2 487 53.8
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.9e-138 495.0 480 55.0
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 8.8e-137 491.5 394 60.4
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-136 490.0 489 54.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.9e-132 476.5 402 58.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.2e-130 471.1 507 47.3
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.4e-129 467.6 327 70.9
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 6.7e-129 465.3 394 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 6.3e-127 458.8 505 46.5
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 4.2e-123 446.0 324 67.6
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 4.7e-122 442.6 493 46.0
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 6.1e-122 442.2 398 60.1
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 6.8e-121 438.7 342 65.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.7e-120 435.6 458 50.7
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.9e-117 425.6 339 64.3
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.7e-116 424.1 292 70.5
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.9e-111 406.0 341 58.4
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 4.1e-110 402.9 333 61.9
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 3.5e-109 399.8 332 60.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 7.8e-109 398.7 414 53.4
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 2.3e-105 387.1 441 49.4
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 3.2e-102 376.7 641 34.8
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 8.6e-100 368.6 284 64.4
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.6e-88 330.5 235 63.4
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.2e-86 322.0 226 63.7
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.7e-85 320.5 460 40.9
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.9e-83 314.3 275 56.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-75 288.5 346 45.1
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.6e-69 268.1 598 32.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 4.5e-64 250.0 257 52.5
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 2.2e-63 247.7 156 75.6
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.8e-63 246.9 168 69.6
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 4.2e-62 243.4 157 71.3
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.5e-61 240.4 154 74.0
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.3e-60 238.4 147 74.1
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.8e-60 238.0 150 72.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 4.3e-59 233.4 468 33.1
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 6.2e-58 229.6 146 75.3
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-56 225.3 195 54.4
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 4.3e-51 206.8 146 65.8
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 2.0e-48 198.0 134 73.1
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.3e-44 184.5 147 59.9
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 3.3e-43 180.6 185 54.6
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-41 175.6 171 49.7
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-41 175.6 118 67.8
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.0e-41 172.6 128 65.6
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-36 157.9 198 44.9
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.8e-34 151.0 157 49.0
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.2e-34 149.4 142 57.0
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.1e-33 146.0 109 60.6
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.2e-23 114.8 76 65.8
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-21 108.2 88 53.4
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 9.1e-17 92.8 86 52.3
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.0e-15 89.4 73 57.5
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.9e-15 87.8 73 58.9
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 9.1e-09 66.2 62 54.8


User provided reference genes

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