Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 0.0e+00 1182.2 598 100.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 7.0e-254 880.6 555 79.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 8.6e-252 873.6 588 77.6
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.2e-229 800.0 561 71.8
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.1e-226 789.3 565 71.5
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.1e-225 786.9 562 70.5
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.8e-225 786.2 528 73.9
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.9e-223 778.9 541 72.6
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 4.1e-222 775.0 536 71.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 1.2e-221 773.5 568 69.0
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 4.6e-221 771.5 527 72.9
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 2.3e-220 769.2 532 71.6
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 5.6e-219 764.6 536 71.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.2e-218 763.5 536 70.9
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.6e-218 763.1 565 67.4
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.1e-217 760.4 536 70.5
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.4e-216 755.4 561 68.6
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 9.9e-216 753.8 547 70.9
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.9e-215 752.3 539 71.1
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.9e-214 749.6 533 70.5
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.4e-214 749.2 550 69.5
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 5.4e-214 748.0 520 71.3
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.0e-212 743.8 563 66.6
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 6.6e-212 741.1 527 69.6
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.5e-211 740.0 527 69.6
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 1.9e-211 739.6 529 69.8
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 2.5e-211 739.2 520 70.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 5.6e-211 738.0 566 67.5
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 7.3e-211 737.6 489 73.4
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 2.4e-209 732.6 517 70.0
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.4e-209 732.6 567 66.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.1e-209 732.3 471 74.7
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 4.0e-209 731.9 557 67.9
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.4e-208 728.8 530 69.6
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.6e-208 727.6 525 69.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 9.9e-208 727.2 505 71.1
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.9e-207 725.7 511 69.3
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 3.8e-207 725.3 539 67.3
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.2e-206 722.2 591 63.5
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 9.3e-206 720.7 570 64.4
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 2.7e-205 719.2 508 69.7
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.7e-205 719.2 528 68.0
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 4.6e-205 718.4 508 69.3
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.7e-204 716.5 528 68.6
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.9e-203 713.0 517 68.1
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 7.4e-203 711.1 492 71.5
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 9.6e-203 710.7 567 65.1
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 6.2e-202 708.0 568 63.4
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 4.5e-200 701.8 539 66.0
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 5.8e-200 701.4 539 65.7
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 7.6e-200 701.0 529 66.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.7e-199 699.9 418 81.6
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.7e-197 692.6 490 69.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 4.6e-197 691.8 562 65.1
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.3e-196 690.3 564 63.1
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-196 689.9 534 64.4
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 3.0e-196 689.1 527 64.5
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.0e-196 689.1 515 66.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 5.6e-195 684.9 517 65.4
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.8e-194 682.6 546 62.8
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-193 679.5 540 63.0
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.4e-193 679.5 551 62.8
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.4e-193 679.5 488 67.4
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.1e-193 679.1 563 62.2
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.0e-191 674.1 538 63.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.9e-191 672.5 507 65.3
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.4e-190 670.2 556 61.9
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 3.5e-189 665.6 522 64.0
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 6.0e-189 664.8 487 65.9
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 3.9e-188 662.1 485 67.6
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 2.5e-187 659.4 626 56.2
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.7e-187 658.3 490 67.3
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.4e-185 653.7 534 62.5
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.5e-184 650.2 479 67.4
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.2e-182 642.1 488 67.2
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 5.5e-182 641.7 510 64.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.8e-180 636.7 490 66.1
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.4e-177 626.3 528 60.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 6.9e-177 624.8 527 59.0
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.6e-176 622.9 539 60.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.0e-175 620.9 485 65.6
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.3e-175 620.5 534 60.1
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.2e-173 614.0 555 57.7
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.3e-172 609.8 537 60.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 5.7e-171 605.1 504 61.7
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.5e-168 597.0 491 59.7
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.7e-168 594.7 520 58.1
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-166 590.5 484 60.5
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.2e-166 589.3 529 57.1
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-165 586.3 524 57.1
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.6e-165 585.9 496 59.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 3.9e-164 582.4 499 59.9
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-162 577.4 528 55.9
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 5.3e-161 572.0 471 59.9
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.0e-159 567.8 429 68.3
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.0e-159 567.8 490 56.9
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.2e-158 562.4 426 66.7
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 8.0e-157 558.1 452 59.5
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 4.0e-156 555.8 488 56.6
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.8e-156 554.7 497 55.9
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.3e-155 552.7 495 57.6
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 7.7e-152 541.6 525 58.1
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-151 540.8 529 55.6
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.7e-151 540.4 454 61.7
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-149 533.1 528 53.2
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 4.5e-144 515.8 493 54.2
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.5e-139 500.7 435 56.8
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 5.7e-139 498.8 488 53.5
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 2.8e-138 496.5 501 49.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-137 494.6 490 54.5
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.4e-137 494.2 394 60.9
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.7e-136 490.0 482 53.9
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.1e-134 484.6 505 48.1
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 5.6e-134 482.3 394 58.9
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.1e-133 480.3 328 72.3
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.7e-127 460.7 575 44.0
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 3.9e-127 459.5 327 68.8
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 9.5e-126 454.9 342 67.0
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.2e-125 454.5 394 61.9
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.1e-124 449.9 458 52.0
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.0e-123 447.2 293 74.4
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.5e-115 421.0 334 64.1
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 4.4e-115 419.5 334 63.8
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.2e-114 417.2 339 63.7
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-112 411.4 414 55.3
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-112 411.0 342 59.6
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 3.1e-108 396.7 433 51.7
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.6e-107 393.7 319 63.9
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 4.4e-107 392.9 631 36.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.9e-90 337.0 455 42.4
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.3e-89 332.0 227 66.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.3e-86 323.2 276 57.6
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-84 317.8 218 65.1
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.1e-79 299.7 346 46.8
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 4.3e-78 296.6 626 32.4
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.5e-70 270.8 224 63.4
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.3e-70 270.0 224 62.9
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.7e-69 266.9 194 67.5
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 3.4e-67 260.4 178 68.5
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 7.6e-67 259.2 161 75.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 5.0e-66 256.5 482 34.6
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-64 251.1 257 52.9
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.7e-64 250.8 182 68.1
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 2.5e-62 244.2 146 78.8
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-54 217.6 195 53.8
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 5.7e-54 216.5 146 67.1
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 5.3e-52 209.9 158 66.5
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.3e-47 194.5 147 62.6
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.2e-43 182.2 186 54.8
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.9e-43 179.9 118 68.6
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.8e-42 177.2 130 65.4
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.1e-40 169.9 171 48.5
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 3.0e-39 167.5 178 49.4
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-37 161.4 198 46.5
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.5e-35 153.7 143 58.7
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.5e-34 149.4 108 63.0
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.0e-23 115.9 76 68.4
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-21 108.2 88 52.3
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 3.3e-17 94.4 66 65.2
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 8.0e-16 89.7 73 60.3
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-15 89.0 73 57.5
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.3e-10 72.4 63 57.1


User provided reference genes

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