Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 4.9e-35 150.6 77 100.0
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 8.2e-22 106.7 77 75.3
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 1.1e-21 106.3 77 74.0
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 1.4e-21 105.9 76 75.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 3.1e-21 104.8 77 71.4
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 4.1e-21 104.4 77 71.4
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 3.4e-20 101.3 80 67.5
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 4.5e-20 100.9 77 71.4
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.3e-19 99.4 77 70.1
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.7e-19 99.0 72 72.2
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.7e-19 99.0 77 70.1
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 3.8e-19 97.8 77 67.5
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 6.5e-19 97.1 77 67.5
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.1e-18 96.3 77 64.9
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 1.4e-18 95.9 77 64.9
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.9e-18 95.5 77 67.5
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 3.2e-18 94.7 74 70.3
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 5.5e-18 94.0 72 69.4
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 7.2e-18 93.6 50 90.0
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 9.3e-18 93.2 78 65.4
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.2e-17 92.8 77 64.9
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 1.6e-17 92.4 74 70.3
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.6e-17 92.4 78 64.1
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 2.1e-17 92.0 77 63.6
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.7e-17 91.7 72 69.4
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 2.7e-17 91.7 78 69.2
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 2.7e-17 91.7 77 64.9
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 2.7e-17 91.7 69 73.9
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.6e-17 91.3 65 72.3
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 6.1e-17 90.5 77 63.6
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 6.1e-17 90.5 77 63.6
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 7.9e-17 90.1 77 63.6
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 7.9e-17 90.1 77 63.6
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 7.9e-17 90.1 77 63.6
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.0e-16 89.7 77 63.6
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.0e-16 89.7 77 63.6
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.0e-16 89.7 70 70.0
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.3e-16 89.4 77 63.6
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.3e-16 89.4 50 84.0
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.8e-16 89.0 78 64.1
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.8e-16 89.0 78 64.1
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.8e-16 89.0 70 70.0
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.3e-16 88.6 78 64.1
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 2.3e-16 88.6 77 61.0
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 3.0e-16 88.2 78 61.5
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 3.9e-16 87.8 77 62.3
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 3.9e-16 87.8 78 60.3
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 5.1e-16 87.4 70 68.6
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 5.1e-16 87.4 49 81.6
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 6.7e-16 87.0 78 62.8
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 6.7e-16 87.0 78 62.8
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 6.7e-16 87.0 77 62.3
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 6.7e-16 87.0 78 61.5
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 8.7e-16 86.7 78 62.8
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 8.7e-16 86.7 75 57.3
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 8.7e-16 86.7 77 61.0
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 1.9e-15 85.5 77 61.0
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 7.4e-15 83.6 77 58.4
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 9.7e-15 83.2 78 64.1
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 1.3e-14 82.8 65 66.2
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 2.2e-14 82.0 78 60.3
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 3.7e-14 81.3 68 64.7
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 4.8e-14 80.9 59 62.7
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 5.3e-13 77.4 53 67.9
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 9.1e-13 76.6 77 55.8
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.5e-12 75.9 40 82.5
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.5e-12 75.9 73 54.8
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.5e-12 75.9 73 54.8
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 2.6e-12 75.1 49 73.5
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 3.4e-12 74.7 46 71.7
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 3.4e-12 74.7 69 55.1
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 3.4e-12 74.7 77 54.5
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 1.0e-11 73.2 65 60.0
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.3e-11 72.8 73 53.4
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.7e-11 72.4 72 52.8
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 3.8e-11 71.2 49 73.5
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 5.0e-11 70.9 79 55.7
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.4e-10 69.3 67 55.2
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 1.8e-08 62.4 67 50.7
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 3.0e-08 61.6 69 49.3
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 3.3e-07 58.2 48 54.2
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 3.7e-06 54.7 47 63.8
Sed0025248 Sechium edule HOM05D066588 ORTHO05D010018 3.7e-06 54.7 49 63.3
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 4.8e-06 54.3 48 60.4
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 6.3e-06 53.9 48 62.5
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 6.3e-06 53.9 35 80.0


User provided reference genes

Program Settings