Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 1.9e-185 652.5 368 100.0
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.4e-148 530.0 375 75.2
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 2.7e-147 525.8 375 76.0
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.1e-144 516.2 365 75.3
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.1e-140 503.8 375 75.5
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 7.1e-140 501.1 375 75.7
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 9.3e-140 500.7 353 75.6
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.0e-138 497.3 377 76.1
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.3e-138 496.9 396 71.0
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.1e-135 487.3 352 73.3
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.8e-135 486.5 376 71.5
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.8e-135 486.5 375 69.6
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 2.6e-134 482.6 375 70.1
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 5.8e-134 481.5 375 69.9
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 7.6e-134 481.1 376 74.7
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.2e-133 479.6 369 70.2
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 6.4e-133 478.0 369 67.2
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-132 477.2 369 69.9
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.4e-132 476.9 375 69.6
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.5e-132 474.9 369 69.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.6e-131 473.4 350 72.6
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.9e-131 471.1 369 69.4
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 1.0e-130 470.7 370 76.5
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.8e-130 469.9 375 70.9
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 3.9e-130 468.8 376 73.1
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.9e-130 468.8 376 71.0
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 6.7e-130 468.0 377 67.4
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 3.7e-128 462.2 376 68.4
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 6.2e-128 461.5 351 73.8
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 9.0e-127 457.6 354 70.9
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.2e-126 457.2 386 67.9
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 5.8e-126 454.9 377 68.7
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 7.6e-126 454.5 351 73.5
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 2.9e-125 452.6 375 69.3
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 4.9e-125 451.8 423 62.2
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 6.5e-125 451.4 387 66.4
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.5e-125 451.4 377 69.2
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 8.4e-125 451.1 369 66.4
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.5e-124 449.5 422 61.1
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 4.2e-124 448.7 373 66.8
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.2e-123 447.2 371 69.8
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.1e-123 446.4 380 67.6
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 2.7e-123 446.0 350 70.3
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 7.9e-123 444.5 379 68.1
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 7.9e-123 444.5 378 67.7
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.0e-122 444.1 353 68.6
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 6.7e-122 441.4 377 69.5
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 8.7e-122 441.0 353 71.7
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 8.7e-122 441.0 382 63.6
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-121 440.7 347 68.0
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.7e-120 435.6 367 66.8
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.1e-119 434.1 349 66.5
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.6e-118 429.5 355 65.4
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 1.3e-117 427.2 414 60.4
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.3e-117 427.2 379 68.9
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 2.2e-117 426.4 377 71.4
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 2.2e-117 426.4 378 67.7
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 5.0e-117 425.2 353 70.3
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.2e-116 421.4 372 62.6
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 1.6e-115 420.2 360 69.2
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 2.1e-115 419.9 373 67.6
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 4.6e-115 418.7 373 68.6
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 6.1e-115 418.3 379 64.4
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 6.1e-115 418.3 347 65.1
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 7.9e-115 417.9 425 62.1
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.0e-114 417.5 373 67.3
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.8e-114 416.8 371 67.7
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 6.7e-114 414.8 356 64.3
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.9e-113 413.3 376 65.2
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.5e-113 412.9 371 67.1
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.3e-112 408.3 359 61.8
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.1e-111 407.5 353 66.0
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.4e-111 407.1 376 62.0
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.4e-111 407.1 383 62.7
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.8e-111 406.8 354 62.7
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.1e-111 405.6 359 61.3
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 5.3e-111 405.2 389 61.2
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.5e-110 403.7 373 66.5
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 2.6e-110 402.9 372 64.8
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.7e-109 400.2 399 59.6
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 8.5e-109 397.9 325 72.6
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 1.2e-107 394.0 442 55.2
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 3.0e-106 389.4 369 64.8
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 5.1e-106 388.7 372 60.8
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 8.8e-106 387.9 373 66.5
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.0e-105 386.7 373 62.2
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 5.7e-105 385.2 375 63.5
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 9.7e-105 384.4 358 61.5
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.7e-104 383.6 359 63.5
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 4.8e-104 382.1 353 64.3
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.4e-103 380.6 353 62.3
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 2.0e-102 376.7 365 59.5
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 1.7e-101 373.6 369 55.6
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 2.2e-101 373.2 357 60.8
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.9e-101 372.9 352 64.5
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 3.8e-101 372.5 275 73.8
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.9e-100 370.2 374 60.4
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 9.4e-100 367.9 375 64.8
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 9.4e-100 367.9 375 64.8
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 1.2e-99 367.5 375 64.0
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.2e-99 367.5 376 63.8
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 1.6e-99 367.1 374 64.2
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 1.0e-98 364.4 378 61.1
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.0e-98 364.4 367 61.9
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.6e-97 359.8 419 53.0
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 3.3e-97 359.4 377 61.0
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 4.4e-97 359.0 371 58.8
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 1.3e-96 357.5 388 61.3
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.4e-95 354.0 351 63.0
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.1e-95 352.4 282 66.3
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.5e-92 342.0 311 65.9
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 3.6e-91 339.3 353 58.9
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.0e-90 337.8 354 55.6
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.8e-90 337.0 358 55.6
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.8e-90 337.0 356 55.3
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 2.3e-90 336.7 500 46.2
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 5.2e-90 335.5 354 57.1
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 6.7e-90 335.1 353 62.9
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 5.9e-86 322.0 350 58.3
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 1.0e-85 321.2 481 48.2
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 1.1e-84 317.8 385 53.2
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.3e-82 310.1 281 65.5
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.8e-82 308.1 411 47.7
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 4.4e-81 305.8 396 52.3
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 7.0e-79 298.5 346 54.6
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 7.0e-79 298.5 404 52.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.6e-78 297.4 321 56.1
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 3.6e-75 286.2 405 53.1
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.4e-74 284.3 271 66.8
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 5.9e-70 268.9 158 82.9
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.1e-58 231.5 381 47.2
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 8.9e-58 228.4 305 53.4
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 8.9e-58 228.4 305 53.4
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.4e-55 221.1 187 68.4
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 2.4e-55 220.3 248 54.4
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.3e-52 209.9 214 59.3
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.6e-51 207.6 682 29.9
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.1e-51 207.2 98 96.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.9e-48 196.8 99 92.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.9e-48 196.8 99 92.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 4.3e-44 183.0 318 46.5
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.6e-43 181.0 224 45.1
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 3.4e-41 173.3 93 89.2
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 9.2e-39 165.2 221 52.0
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 1.7e-37 161.0 218 51.4
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.2e-33 148.3 221 46.6
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 9.9e-33 145.2 87 82.8
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 8.4e-32 142.1 180 59.4
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.5e-28 130.6 360 31.9
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 9.6e-28 128.6 71 81.7
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.8e-26 124.4 140 52.9
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.9e-23 114.4 94 55.3
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 4.2e-23 113.2 117 48.7
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.9e-22 109.0 65 78.5
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.0e-21 108.6 160 44.4
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.7e-16 91.3 79 55.7
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 6.9e-10 69.3 55 65.5
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 1.0e-08 65.5 74 48.6
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 4.6e-06 56.6 64 46.9


User provided reference genes

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