Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 3.8e-168 594.7 295 100.0
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 8.5e-136 487.3 293 79.9
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 6.1e-134 481.1 293 78.8
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 8.8e-133 477.2 292 79.1
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 5.7e-132 474.6 293 76.8
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 6.3e-131 471.1 295 78.3
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 8.2e-131 470.7 292 77.7
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 7.0e-130 467.6 293 77.8
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 7.7e-129 464.2 297 77.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.7e-128 463.0 292 76.7
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.2e-128 462.6 294 76.9
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 2.9e-128 462.2 294 76.2
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 3.2e-127 458.8 292 76.7
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.2e-127 458.4 292 76.0
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 4.2e-127 458.4 291 77.0
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.3e-125 452.6 293 76.8
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 6.8e-125 451.1 294 74.5
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-124 450.3 293 73.4
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 5.7e-124 448.0 292 74.7
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.7e-123 446.4 293 73.7
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.8e-123 444.9 293 74.7
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 6.3e-123 444.5 292 75.0
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.4e-122 443.4 293 74.4
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 3.1e-122 442.2 293 74.1
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 9.1e-122 440.7 293 71.7
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.2e-121 440.3 292 74.3
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.6e-121 439.9 292 74.0
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.0e-121 439.5 293 71.3
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 2.7e-121 439.1 293 70.6
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.3e-120 436.8 310 68.7
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 9.5e-119 430.6 295 70.8
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 2.1e-118 429.5 293 70.3
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 3.6e-118 428.7 295 70.2
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 2.3e-117 426.0 293 69.6
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 2.0e-116 422.9 295 69.8
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.7e-115 419.9 293 70.6
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.8e-115 419.1 293 68.9
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 3.7e-115 418.7 290 69.3
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.9e-115 418.3 319 67.7
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 4.9e-115 418.3 309 64.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 8.3e-115 417.5 293 68.3
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 8.3e-115 417.5 293 68.3
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.1e-114 417.2 294 68.4
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.8e-114 416.4 290 68.3
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 2.4e-114 416.0 293 68.6
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 3.1e-114 415.6 293 67.9
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 4.1e-114 415.2 293 70.6
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 4.5e-113 411.8 293 69.3
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 4.5e-113 411.8 293 70.0
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.0e-112 410.6 292 69.2
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-112 410.2 299 68.2
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 3.8e-112 408.7 294 66.0
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.9e-111 406.4 310 65.5
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 6.1e-110 401.4 296 65.5
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 1.4e-109 400.2 295 65.8
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 5.2e-109 398.3 268 73.1
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 6.8e-109 397.9 276 70.7
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 7.5e-108 394.4 293 66.6
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 7.5e-108 394.4 295 64.1
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 7.5e-108 394.4 257 74.3
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.3e-107 393.7 291 68.0
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.7e-107 393.3 296 63.9
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 4.9e-107 391.7 328 61.9
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.2e-106 389.0 291 66.3
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 6.0e-105 384.8 295 63.7
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 1.7e-104 383.3 238 77.7
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 3.0e-104 382.5 291 64.3
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 3.0e-104 382.5 299 63.2
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 3.9e-104 382.1 361 56.0
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 2.8e-102 375.9 296 62.8
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.8e-101 373.2 270 66.7
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 2.3e-101 372.9 294 61.6
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.7e-99 366.7 294 61.2
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 4.9e-99 365.2 229 76.9
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.1e-98 364.0 292 62.7
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.4e-98 363.6 273 65.6
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 2.4e-98 362.8 290 60.3
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.6e-97 360.1 299 61.5
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 6.0e-97 358.2 259 65.6
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.8e-97 357.8 312 59.9
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.3e-91 340.5 299 57.2
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 6.0e-89 331.6 285 58.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 3.0e-88 329.3 268 62.3
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 9.5e-87 324.3 231 70.1
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 6.2e-86 321.6 211 73.9
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 8.1e-86 321.2 229 69.4
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.1e-85 320.9 201 75.6
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 5.2e-85 318.5 201 74.6
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 2.7e-81 306.2 200 72.0
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.6e-78 295.8 259 57.9
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.5e-76 290.4 286 53.8
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 7.1e-74 281.6 175 75.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 9.3e-74 281.2 295 47.1
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 3.5e-73 279.3 303 47.2
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.9e-71 273.5 291 47.8
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 7.3e-71 271.6 296 47.0
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 2.6e-68 263.1 293 50.9
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.7e-67 260.4 198 62.6
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 5.4e-66 255.4 211 58.8
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 6.7e-64 248.4 186 65.6
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 4.8e-62 242.3 189 65.6
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.0e-60 236.9 173 67.6
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 4.3e-55 219.2 183 61.2
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.8e-53 213.8 208 51.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 7.9e-49 198.4 235 43.4
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.7e-43 180.6 137 65.7
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 1.4e-40 171.0 124 63.7
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.2e-38 163.7 95 84.2
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.8e-37 160.6 96 78.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 7.7e-36 155.2 308 32.8
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 1.4e-34 151.0 96 78.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 3.0e-32 143.3 95 71.6
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 3.9e-32 142.9 94 73.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-31 141.4 147 50.3
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.2e-28 131.3 125 53.6
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.3e-27 127.9 90 68.9
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.1e-26 124.8 108 58.3
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 6.7e-24 115.5 80 66.2
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 8.8e-24 115.2 98 58.2
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.1e-23 114.8 171 35.1
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 3.3e-23 113.2 95 61.1
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 7.4e-23 112.1 68 73.5
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 9.7e-23 111.7 81 61.7
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 3.7e-22 109.8 97 56.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.2e-20 104.8 123 48.0
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.6e-20 103.6 90 56.7
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 9.4e-18 95.1 55 74.5
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 8.0e-17 92.0 182 31.3
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.0e-15 87.4 90 53.3
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-11 74.3 54 63.0
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.2e-11 73.9 67 53.7
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 3.8e-11 73.2 53 60.4


User provided reference genes

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