Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 1.8e-49 199.1 115 100.0
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 1.8e-28 129.4 120 67.5
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 9.6e-27 123.6 122 67.2
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.3e-26 123.2 119 68.9
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 1.3e-26 123.2 113 67.3
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 6.3e-26 120.9 125 68.0
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 8.2e-26 120.6 118 61.9
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.4e-25 119.8 119 68.9
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 1.8e-25 119.4 115 63.5
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 2.4e-25 119.0 119 67.2
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 5.3e-25 117.9 122 63.1
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 6.9e-25 117.5 125 64.8
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 1.2e-24 116.7 123 65.0
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 1.2e-24 116.7 116 66.4
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.2e-24 116.7 124 60.5
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.2e-24 116.7 122 60.7
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 1.5e-24 116.3 114 64.9
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 2.0e-24 115.9 114 64.9
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 5.9e-24 114.4 121 64.5
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 7.6e-24 114.0 113 61.9
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 1.3e-23 113.2 105 63.8
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.7e-23 112.8 119 63.9
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.7e-23 112.8 119 63.9
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.7e-23 112.8 115 60.0
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 1.7e-23 112.8 105 67.6
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 2.2e-23 112.5 111 64.0
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 3.8e-23 111.7 125 61.6
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 5.0e-23 111.3 119 63.9
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 6.5e-23 110.9 119 64.7
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 6.5e-23 110.9 122 60.7
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 8.4e-23 110.5 115 60.0
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 1.1e-22 110.2 119 63.0
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 1.4e-22 109.8 122 62.3
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 1.4e-22 109.8 115 60.0
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 2.5e-22 109.0 115 60.0
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 2.5e-22 109.0 115 59.1
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 2.5e-22 109.0 120 60.8
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 3.2e-22 108.6 123 61.0
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 3.2e-22 108.6 119 62.2
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 5.5e-22 107.8 128 60.2
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 5.5e-22 107.8 115 61.7
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 9.3e-22 107.1 119 63.9
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.6e-21 106.3 117 60.7
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 1.6e-21 106.3 127 63.0
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 2.1e-21 105.9 121 61.2
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 2.1e-21 105.9 117 60.7
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 7.9e-21 104.0 122 58.2
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 7.9e-21 104.0 115 57.4
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.0e-20 103.6 123 59.3
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.8e-20 102.8 118 60.2
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 2.3e-20 102.4 118 58.5
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 3.0e-20 102.1 120 55.8
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 5.1e-20 101.3 124 56.5
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 6.7e-20 100.9 121 59.5
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.1e-19 100.1 113 60.2
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 1.1e-19 100.1 122 57.4
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.5e-19 99.8 100 60.0
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 2.5e-19 99.0 124 53.2
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 3.3e-19 98.6 122 56.6
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 5.7e-19 97.8 123 58.5
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.7e-19 97.1 121 57.0
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 3.7e-18 95.1 121 56.2
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 4.8e-18 94.7 115 53.9
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 4.8e-18 94.7 121 57.9
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 4.8e-18 94.7 122 55.7
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 8.2e-18 94.0 123 55.3
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 8.2e-18 94.0 121 55.4
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 1.1e-17 93.6 122 55.7
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 1.1e-17 93.6 124 54.0
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 1.8e-17 92.8 121 55.4
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.8e-17 92.8 121 55.4
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 1.2e-16 90.1 122 57.4
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 1.5e-16 89.7 118 55.1
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.7e-15 86.3 120 56.7
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 1.7e-15 86.3 102 59.8
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 3.8e-15 85.1 120 53.3
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 3.8e-15 85.1 120 53.3
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 3.8e-15 85.1 123 53.7
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.8e-15 85.1 58 84.5
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 5.0e-15 84.7 122 52.5
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 8.5e-15 84.0 122 54.9
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 1.9e-14 82.8 120 54.2
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 2.5e-14 82.4 117 52.1
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 3.2e-14 82.0 124 53.2
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 4.2e-14 81.6 120 54.2
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 4.2e-14 81.6 120 51.7
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 4.2e-14 81.6 120 54.2
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 5.5e-14 81.3 121 51.2
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 9.4e-14 80.5 122 50.8
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 1.2e-13 80.1 122 51.6
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 2.1e-13 79.3 129 51.9
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 2.7e-13 79.0 122 50.8
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 2.7e-13 79.0 123 50.4
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 2.7e-13 79.0 105 54.3
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 6.1e-13 77.8 121 48.8
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 6.1e-13 77.8 121 48.8
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 7.9e-13 77.4 120 52.5
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 1.8e-12 76.3 111 53.2
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 2.3e-12 75.9 114 49.1
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 3.0e-12 75.5 114 49.1
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 1.5e-11 73.2 114 49.1
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 2.0e-11 72.8 61 70.5
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 2.0e-11 72.8 72 65.3
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 2.0e-11 72.8 97 51.5
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 5.7e-11 71.2 131 45.0
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 9.7e-11 70.5 128 46.1
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 6.3e-10 67.8 48 77.1
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 1.4e-09 66.6 99 54.5
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 1.4e-09 66.6 121 46.3
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.4e-09 66.6 220 32.7
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 1.2e-08 63.5 73 56.2
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.3e-07 60.1 67 58.2
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 3.2e-06 55.5 68 57.4
Sabra10G0072900 Salix brachista HOM05D024558 ORTHO05D007696 7.2e-06 54.3 38 81.6
Sabra19G0001200 Salix brachista HOM05D000340 ORTHO05D000677 7.2e-06 54.3 52 67.3


User provided reference genes

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