Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 8.9e-63 243.4 123 100.0
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 2.5e-41 172.2 104 82.7
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 9.6e-41 170.2 102 83.3
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 2.1e-40 169.1 102 82.4
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 2.8e-40 168.7 102 82.4
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.8e-40 168.7 102 83.3
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 3.7e-40 168.3 102 80.4
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 6.2e-40 167.5 102 80.4
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 8.1e-40 167.2 102 80.4
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.1e-39 166.8 104 79.8
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.4e-39 166.4 102 80.4
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 1.4e-39 166.4 103 78.6
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 1.8e-39 166.0 102 77.5
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.4e-39 165.6 102 81.4
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.4e-39 165.6 109 78.0
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.1e-39 165.2 102 81.4
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 3.1e-39 165.2 102 80.4
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 4.0e-39 164.9 103 77.7
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 4.0e-39 164.9 105 76.2
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 4.0e-39 164.9 102 80.4
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 5.3e-39 164.5 100 77.0
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 5.3e-39 164.5 102 80.4
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 6.9e-39 164.1 102 79.4
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 6.9e-39 164.1 102 80.4
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 6.9e-39 164.1 102 80.4
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 9.0e-39 163.7 102 79.4
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 9.0e-39 163.7 102 79.4
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 9.0e-39 163.7 102 79.4
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.2e-38 163.3 102 80.4
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.5e-38 162.9 102 78.4
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.5e-38 162.9 101 80.2
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.5e-38 162.9 102 78.4
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 2.0e-38 162.5 102 78.4
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 2.0e-38 162.5 103 80.6
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 2.6e-38 162.2 102 77.5
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 2.6e-38 162.2 99 79.8
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 3.4e-38 161.8 102 77.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.4e-38 161.8 102 77.5
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 5.8e-38 161.0 101 79.2
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 5.8e-38 161.0 102 76.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 5.8e-38 161.0 102 75.5
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 5.8e-38 161.0 99 77.8
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 7.6e-38 160.6 109 73.4
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 9.9e-38 160.2 102 76.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 9.9e-38 160.2 102 76.5
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.3e-37 159.8 100 78.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.3e-37 159.8 100 78.0
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 1.3e-37 159.8 102 76.5
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.3e-37 159.8 102 77.5
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 1.3e-37 159.8 102 77.5
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 2.2e-37 159.1 102 74.5
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 2.9e-37 158.7 102 77.5
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.9e-37 157.9 102 76.5
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 6.4e-37 157.5 101 76.2
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 6.4e-37 157.5 100 79.0
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 6.4e-37 157.5 102 76.5
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 8.4e-37 157.1 105 72.4
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 8.4e-37 157.1 102 75.5
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.1e-36 156.8 102 75.5
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.1e-36 156.8 102 75.5
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.4e-36 156.4 97 78.4
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 1.9e-36 156.0 102 75.5
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 3.2e-36 155.2 102 76.5
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.2e-36 155.2 103 72.8
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 4.2e-36 154.8 102 73.5
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 9.3e-36 153.7 102 72.5
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 1.2e-35 153.3 107 69.2
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.6e-35 152.9 99 76.8
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.6e-35 152.9 94 81.9
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 1.6e-35 152.9 101 75.2
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 1.6e-35 152.9 102 72.5
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 2.7e-35 152.1 101 75.2
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 3.5e-35 151.8 102 71.6
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 4.6e-35 151.4 97 75.3
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 4.6e-35 151.4 102 71.6
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 4.6e-35 151.4 102 71.6
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 4.6e-35 151.4 101 74.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.6e-35 151.4 101 74.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.6e-35 151.4 101 74.3
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 4.6e-35 151.4 102 73.5
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 4.6e-35 151.4 99 74.7
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 6.0e-35 151.0 102 71.6
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 6.0e-35 151.0 102 70.6
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 6.0e-35 151.0 102 71.6
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.0e-34 150.2 102 71.6
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.0e-34 150.2 103 69.9
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.0e-34 150.2 103 69.9
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.0e-34 150.2 102 71.6
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.0e-34 150.2 94 80.9
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.3e-34 149.8 101 73.3
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-34 149.4 102 70.6
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.8e-34 149.4 102 70.6
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.8e-34 149.4 97 78.4
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 3.0e-34 148.7 112 66.1
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 3.0e-34 148.7 101 71.3
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.9e-34 148.3 99 72.7
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 3.9e-34 148.3 99 71.7
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 5.1e-34 147.9 102 71.6
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 6.7e-34 147.5 102 70.6
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 8.7e-34 147.1 103 69.9
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 8.7e-34 147.1 101 71.3
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.1e-33 146.7 99 73.7
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.1e-33 146.7 97 75.3
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-33 146.7 102 69.6
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.5e-33 146.4 96 74.0
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.9e-33 146.0 102 69.6
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.9e-33 146.0 102 69.6
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 3.3e-33 145.2 97 74.2
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 3.3e-33 145.2 102 67.6
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 4.3e-33 144.8 96 75.0
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 4.3e-33 144.8 96 75.0
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 5.6e-33 144.4 102 69.6
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 7.4e-33 144.1 100 70.0
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 9.6e-33 143.7 101 72.3
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 1.3e-32 143.3 97 73.2
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.8e-31 139.4 95 71.6
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 4.0e-31 138.3 94 75.5
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 5.3e-31 137.9 94 75.5
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-30 136.0 94 74.5
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-30 136.0 94 74.5
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 2.6e-30 135.6 94 74.5
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 1.3e-29 133.3 102 64.7
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 6.7e-26 120.9 107 63.6
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 8.7e-26 120.6 103 65.0
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 9.7e-25 117.1 74 71.6
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 6.3e-24 114.4 78 70.5
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.4e-23 113.2 68 76.5
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 9.0e-23 110.5 72 69.4
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.5e-22 109.8 157 42.7
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 1.5e-22 109.8 73 69.9
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.3e-21 106.7 73 65.8
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 1.7e-21 106.3 73 64.4
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 8.5e-21 104.0 90 60.0
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 1.9e-20 102.8 68 69.1
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.3e-20 100.5 68 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 2.3e-18 95.9 85 58.8
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.1e-17 93.6 87 56.3
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.9e-17 92.8 83 55.4
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 5.7e-17 91.3 102 52.0
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 2.2e-16 89.4 61 68.9
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.5e-14 81.6 97 53.6
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 6.5e-13 77.8 83 49.4
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 7.2e-12 74.3 54 66.7
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 1.4e-10 70.1 64 53.1
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 9.7e-09 63.9 87 48.3
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 4.8e-08 61.6 74 45.9
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.8e-08 61.6 103 38.8


User provided reference genes

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