Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.3e-196 689.5 344 100.0
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 4.6e-157 558.1 333 82.0
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.6e-149 533.1 331 76.7
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 2.8e-146 522.3 333 75.1
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.1e-145 520.4 325 76.3
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 6.9e-145 517.7 333 75.7
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 5.8e-144 514.6 330 75.2
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 2.2e-143 512.7 333 74.5
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 6.4e-143 511.1 333 74.2
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 2.7e-141 505.8 331 72.8
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.9e-140 501.9 333 71.5
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.1e-139 500.4 332 72.0
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 2.8e-138 495.7 332 72.6
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.6e-138 495.4 333 69.7
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 1.1e-137 493.8 332 72.3
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.4e-137 493.4 332 72.3
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.8e-137 493.0 332 72.6
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.8e-137 493.0 363 66.1
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 3.1e-137 492.3 349 68.8
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 5.3e-137 491.5 332 72.3
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.3e-137 491.5 332 71.7
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.2e-136 490.3 335 69.6
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.2e-136 490.3 333 71.2
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 5.8e-136 488.0 328 71.3
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.8e-135 485.3 326 68.7
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.9e-135 485.0 328 71.0
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 4.9e-135 485.0 331 69.2
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.4e-135 484.6 332 71.4
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 8.4e-135 484.2 330 70.9
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 1.1e-134 483.8 336 73.8
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.1e-134 483.8 365 64.9
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 1.4e-134 483.4 330 70.9
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.4e-134 483.4 328 70.7
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 5.4e-134 481.5 330 70.9
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.6e-133 479.9 330 70.9
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.6e-133 479.9 330 68.8
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 2.1e-133 479.6 330 71.2
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 2.7e-133 479.2 330 70.9
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 2.7e-133 479.2 330 70.9
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 3.5e-133 478.8 330 71.2
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 4.6e-133 478.4 330 70.6
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 6.0e-133 478.0 330 70.9
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 6.0e-133 478.0 333 69.7
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 6.0e-133 478.0 328 68.9
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 7.9e-133 477.6 339 68.7
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.3e-132 476.9 330 70.9
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.3e-132 476.9 328 68.6
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.8e-132 476.5 330 70.0
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 2.3e-132 476.1 333 68.2
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 5.1e-132 474.9 326 70.9
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 5.1e-132 474.9 322 69.6
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.9e-131 473.0 293 75.8
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 2.5e-131 472.6 325 68.3
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 3.3e-131 472.2 326 70.6
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.3e-131 471.9 331 66.8
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.3e-130 470.3 309 73.5
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 2.1e-130 469.5 330 70.3
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.8e-130 469.2 333 67.9
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 2.8e-130 469.2 325 67.7
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 2.8e-130 469.2 332 67.2
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 3.7e-130 468.8 330 67.3
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.1e-129 467.2 330 68.5
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 2.4e-129 466.1 325 67.7
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.1e-129 465.7 332 66.0
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 9.0e-129 464.2 333 67.0
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.2e-128 463.8 327 67.9
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 5.8e-128 461.5 333 66.7
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 1.0e-127 460.7 327 67.3
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 3.8e-127 458.8 331 64.7
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 4.2e-126 455.3 324 67.0
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.0e-124 450.7 331 64.4
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.9e-123 446.4 368 59.2
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 2.5e-123 446.0 355 64.2
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 4.3e-123 445.3 331 65.9
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 7.4e-123 444.5 325 66.8
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 9.6e-123 444.1 347 65.1
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 8.2e-122 441.0 347 64.6
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.1e-121 440.7 384 59.6
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 3.1e-121 439.1 314 68.8
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.6e-120 436.0 333 64.6
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 4.5e-120 435.3 335 65.7
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 5.8e-120 434.9 380 58.9
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 6.5e-119 431.4 322 65.8
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 7.2e-118 427.9 325 67.1
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 2.1e-117 426.4 331 63.1
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 7.9e-117 424.5 322 64.9
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 6.7e-116 421.4 331 62.2
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.1e-113 414.1 319 63.6
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 7.2e-110 401.4 328 58.8
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.0e-108 397.5 338 59.8
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 3.0e-108 396.0 327 59.0
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 3.9e-108 395.6 295 66.8
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 8.8e-108 394.4 262 69.5
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.6e-104 382.9 326 59.5
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.1e-102 377.5 277 65.0
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 7.9e-101 371.3 264 66.3
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.0e-100 370.9 245 73.1
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 3.3e-99 365.9 258 68.6
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 2.8e-98 362.8 236 74.2
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.8e-98 362.8 327 56.9
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 7.7e-96 354.8 295 59.0
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.0e-95 354.4 328 54.9
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 6.3e-90 335.1 333 53.2
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 7.0e-89 331.6 330 52.7
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 3.6e-85 319.3 189 77.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 7.5e-83 311.6 194 73.7
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 3.2e-78 296.2 347 44.4
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.0e-76 291.2 217 63.1
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.4e-76 290.8 231 61.0
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 5.7e-75 285.4 325 46.8
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 3.7e-74 282.7 331 45.6
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 8.6e-71 271.6 331 43.5
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 1.8e-68 263.8 165 71.5
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 5.0e-63 245.7 327 44.3
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.0e-56 223.8 169 66.3
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 4.0e-52 209.5 123 72.4
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 5.2e-52 209.1 169 61.5
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.9e-49 200.7 152 59.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 3.4e-43 179.9 316 37.3
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 9.9e-43 178.3 200 53.0
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.2e-40 171.4 192 42.2
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 2.1e-40 170.6 350 33.1
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 7.8e-40 168.7 154 55.2
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.6e-37 161.0 316 34.8
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.0e-32 142.5 144 52.8
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 4.3e-30 136.3 354 28.8
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.8e-28 131.0 120 55.8
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 9.0e-20 102.1 78 61.5
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 6.4e-18 95.9 245 26.9
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 1.1e-17 95.1 60 73.3
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 7.4e-14 82.4 64 62.5
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.3e-13 81.6 73 53.4
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 5.3e-12 76.3 67 50.7
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 2.6e-11 73.9 65 56.9
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 3.8e-10 70.1 85 49.4
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 2.7e-08 63.9 66 45.5


User provided reference genes

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