Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 4.9e-30 133.7 61 100.0
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 1.6e-28 128.6 61 95.1
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 2.8e-17 91.3 61 70.5
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 2.6e-15 84.7 61 62.3
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 1.3e-14 82.4 61 62.3
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 6.5e-14 80.1 61 63.9
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 5.5e-13 77.0 61 54.1
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 5.5e-13 77.0 60 56.7
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 2.7e-12 74.7 60 55.0
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 2.7e-12 74.7 41 80.5
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 4.6e-12 73.9 46 67.4
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 1.0e-11 72.8 51 60.8
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 1.0e-11 72.8 51 62.7
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 1.0e-11 72.8 41 75.6
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 2.3e-11 71.6 41 73.2
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 5.1e-11 70.5 59 55.9
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 8.8e-11 69.7 61 54.1
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.1e-10 69.3 41 73.2
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.1e-10 69.3 41 73.2
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 2.6e-10 68.2 43 67.4
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 2.6e-10 68.2 43 67.4
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 5.7e-10 67.0 56 58.9
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 7.4e-10 66.6 44 65.9
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 9.7e-10 66.2 45 60.0
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 9.7e-10 66.2 59 52.5
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 1.3e-09 65.9 44 65.9
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 1.3e-09 65.9 44 65.9
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 1.3e-09 65.9 44 65.9
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 1.3e-09 65.9 51 58.8
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 4.8e-09 63.9 44 63.6
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 1.1e-08 62.8 40 67.5
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 6.9e-08 60.1 43 60.5
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 6.9e-08 60.1 43 60.5
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 9.1e-08 59.7 46 58.7
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 2.0e-07 58.5 37 59.5
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 2.6e-07 58.2 51 45.1
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 2.6e-07 58.2 53 54.7
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 3.4e-07 57.8 60 46.7
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 7.7e-07 56.6 41 53.7
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 7.7e-07 56.6 41 53.7
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 7.7e-07 56.6 41 53.7
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 1.7e-06 55.5 37 56.8
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 2.2e-06 55.1 46 47.8
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 3.8e-06 54.3 34 64.7
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 5.0e-06 53.9 42 50.0
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 5.0e-06 53.9 42 50.0
Lsat_1_v5_gn_5_100260 Lactuca sativa HOM05D008584 ORTHO05D010813 5.0e-06 53.9 44 47.7
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 5.0e-06 53.9 40 50.0
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 6.5e-06 53.5 34 64.7
Sp6g21220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 6.5e-06 53.5 34 64.7
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 6.5e-06 53.5 30 66.7
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 8.5e-06 53.1 38 52.6
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 8.5e-06 53.1 37 54.1
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 8.5e-06 53.1 42 47.6
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 8.5e-06 53.1 48 43.8


User provided reference genes

Program Settings